Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006007.1

Orthogroup ID

OG0025603

Physical Location & Seq

Genomic Coordinates Forward (+)

27144 .. 27557

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggtatcactcacctcctcagaaatcccgcttatctacaccttcaaagatgaatgggccttaatacaagccaagctcaccgacctccaggcccaactctcctacttcgccgacttccccacctccacctctaacccattcaccctcgaccttctcctccctgtctcccatacccttgacgacactatttcgctagcccaaaaatgtaagaggcccaattttttcgaggttaataagctcaggactcagagcggcatggattcgattttggcgaaagtagatctctatctttgggatagagagattttgttcaagacattgggacttcaactcctcgttgaagagggagattatccgggcagagtcctggaatttggtgaccatccgggtagacaaagagcttgcgaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

137

Amino Acids

15.56

Weight (kDa)

4.81

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7032	PF23005	3 - 106	1.9e-22	Domain of unknown function (DUF7032)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0025603)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006007.1_g000008 Rmu_sc0007859.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	391
AciI	CCGC	2 cut(s)	29, 252
AcsI	RAATTY	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	46, 313, 329, 341
AjnI	CCWGG	2 cut(s)	87, 366
AluBI	AGCT	3 cut(s)	76, 238, 401
AluI	AGCT	3 cut(s)	76, 238, 401
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	3 cut(s)	57, 90, 212
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	57, 91, 213
AsuC2I	CCSGG	2 cut(s)	357, 387
AsuHPI	GGTGA	4 cut(s)	4, 70, 133, 389
AsuNHI	GCTAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	390
BciT130I	CCWGG	2 cut(s)	89, 368
BcnI	CCSGG	2 cut(s)	357, 387
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	4 cut(s)	89, 357, 368, 387
BmgT120I	GGNCC	3 cut(s)	57, 91, 213
BmrFI	CCNGG	4 cut(s)	89, 357, 368, 387
BmtI	GCTAGC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	357, 387
BsaBI	GATNNNNATC	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	89, 368
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	33, 253, 260
BseRI	GAGGAG	3 cut(s)	7, 146, 323
BshFI	GGCC	3 cut(s)	59, 92, 214
BsiSI	CCGG	2 cut(s)	356, 386
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	3 cut(s)	59, 92, 214
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	2 cut(s)	29, 252
BspANI	GGCC	3 cut(s)	59, 92, 214
BspCNI	CTCAG	3 cut(s)	32, 252, 259
BspOI	GCTAGC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	252
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	89, 368
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	195, 403
BstDEI	CTNAG	3 cut(s)	19, 239, 246
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	280
BstNI	CCWGG	2 cut(s)	89, 368
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	87, 355, 366, 385
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	59, 92, 214
BtsCI	GGATG	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	195, 403
Cfr13I	GGNCC	3 cut(s)	57, 91, 213
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	8 cut(s)	59, 71, 76, 92, 197, 214, 238, 401
CviKI_1	RGCY	8 cut(s)	59, 71, 76, 92, 197, 214, 238, 401
DdeI	CTNAG	3 cut(s)	19, 239, 246
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	87, 366
FaeI	CATG	1 cut(s)	259
FaiI	YATR	2 cut(s)	171, 257
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	59, 92, 214
HapII	CCGG	2 cut(s)	356, 386
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	3 cut(s)	244, 260, 363
HpaII	CCGG	2 cut(s)	356, 386
HphI	GGTGA	4 cut(s)	4, 70, 133, 389
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	22, 249
Hpy188III	TCNNGA	2 cut(s)	241, 313
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	52, 161, 401
HpyF3I	CTNAG	3 cut(s)	19, 239, 246
Hsp92II	CATG	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	8 cut(s)	74, 101, 174, 226, 353, 369, 380, 399
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	217, 371
MlyI	GAGTC	2 cut(s)	238, 372
MseI	TTAA	2 cut(s)	62, 231
MspI	CCGG	2 cut(s)	356, 386
MspR9I	CCNGG	4 cut(s)	89, 357, 368, 387
MvaI	CCWGG	2 cut(s)	89, 368
NciI	CCSGG	2 cut(s)	357, 387
NdeII	GATC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	2 cut(s)	238, 371
PpsI	GAGTC	2 cut(s)	238, 371
Psp6I	CCWGG	2 cut(s)	87, 366
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	87, 366
PspPI	GGNCC	3 cut(s)	57, 91, 213
PsuI	RGATCY	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	62, 231
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	3 cut(s)	57, 91, 213
SchI	GAGTC	2 cut(s)	238, 372
ScrFI	CCNGG	4 cut(s)	89, 357, 368, 387
Sse9I	AATT	2 cut(s)	217, 371
SsiI	CCGC	2 cut(s)	29, 252
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	4 cut(s)	87, 355, 366, 385
TaqI	TCGA	3 cut(s)	147, 225, 263
TasI	AATT	2 cut(s)	217, 371
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	62, 231
Tru9I	TTAA	2 cut(s)	62, 231
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	66
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.