Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0025603

Physical Location & Seq

Genomic Coordinates Reverse (-)

35663702 .. 35666964

Gene Structure 3263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTATGAAGCAGGCAACCAGTTCAGTCAAATGTTGTGCGGGTTGAAACCAGCAAGAAGGCGCGCGACACAGTGCAATAATGCTTTGAGGCCTAAGTTTTCCGAGGTTAATAAGCTCGGGACTCAAAGCAGCACAAATTCGATTTTGACGAAAGTAGATCTCCATCTTTGGGATAGAGAGATTTTGTTCAAGACATCGGGACTTCAGCTCCTCATTGAAGAGGAGATTATCCGGGCAGAGTCCTGGAATTTGGTGACGGTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

88

Amino Acids

10.11

Weight (kDa)

9.18

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025603)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006007.1_g000008 Rmu_sc0007859.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 65
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	136, 247
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	46, 190, 218
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	2 cut(s)	115, 208
AluI	AGCT	2 cut(s)	115, 208
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	2 cut(s)	136, 247
AspLEI	GCGC	2 cut(s)	63, 65
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	233
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	233, 244
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	233, 244
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	19
BsePI	GCGCGC	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	200, 236
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	63, 65
BshFI	GGCC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	232, 262
BslFI	GGGAC	2 cut(s)	133, 213
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	133, 213
BsnI	GGCC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	63, 65
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	102
BssHII	GCGCGC	1 cut(s)	61
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	72, 259
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	13, 63
BstDEI	CTNAG	1 cut(s)	93
BstFNI	CGCG	2 cut(s)	63, 65
BstHHI	GCGC	2 cut(s)	63, 65
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	231, 242
BstUI	CGCG	2 cut(s)	63, 65
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	13, 63
CfoI	GCGC	2 cut(s)	63, 65
Cfr13I	GGNCC	1 cut(s)	259
CpoI	CGGWCCG	1 cut(s)	259
CspI	CGGWCCG	1 cut(s)	259
CviJI	RGCY	3 cut(s)	91, 115, 208
CviKI_1	RGCY	3 cut(s)	91, 115, 208
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	242
FaiI	YATR	1 cut(s)	6
FaqI	GGGAC	2 cut(s)	133, 213
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	130
GlaI	GCGC	2 cut(s)	62, 64
GluI	GCNGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	232, 262
HhaI	GCGC	2 cut(s)	63, 65
Hin6I	GCGC	2 cut(s)	61, 63
HinP1I	GCGC	2 cut(s)	61, 63
HinfI	GANTC	2 cut(s)	121, 239
HpaII	CCGG	2 cut(s)	232, 262
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	3 cut(s)	118, 190, 198
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	72, 259
HpyCH4V	TGCA	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	93
HspAI	GCGC	2 cut(s)	61, 63
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	32, 63, 229, 245, 256
Lsp1109I	GCAGC	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	136, 247
MlyI	GAGTC	2 cut(s)	115, 248
MnlI	CCTC	4 cut(s)	81, 97, 214, 221
MseI	TTAA	1 cut(s)	108
MspI	CCGG	2 cut(s)	232, 262
MspR9I	CCNGG	2 cut(s)	233, 244
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	63, 65
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	253
PauI	GCGCGC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	2 cut(s)	115, 247
PpsI	GAGTC	2 cut(s)	115, 247
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	157
PteI	GCGCGC	1 cut(s)	61
Rsr2I	CGGWCCG	1 cut(s)	259
RsrII	CGGWCCG	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	115, 248
ScrFI	CCNGG	2 cut(s)	233, 244
SetI	ASST	3 cut(s)	108, 117, 210
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	136, 247
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	231, 242
TaaI	ACNGT	2 cut(s)	72, 259
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	136, 247
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	136, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.