Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007859.1

Orthogroup ID

OG0025603

Physical Location & Seq

Genomic Coordinates Forward (+)

524 .. 997

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007859.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgtttcgtcgtctactcaaacccagcaacactcgcctcctcctccgtcttctctctctaaaccctaacacctcctctcttctttcttcttcttcttcctgttccgccatgaaagacccagaaaccaacaaccccatagccctctccacccacctcctcacttgtctctcctcggaaatcccgctcgtccaaaccttcaagggcaaatgggccttaatccaggcgaagctcaccgtcctccaggcccagctcaccgacttcgccggcttccccacctccacctccaaccctctcgccctcgacctcctcctgtccgtctcccacaccctccgcgacgccgtttcgctcgcccagcgctgccagagccccaatttttccgacggcaagctccggactcagagcgacgtcgattccattctcgccaagctcgatctccacctccgatcagatccgacggtcgagattcggccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

157

Amino Acids

17.18

Weight (kDa)

9.25

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025603)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006007.1_g000008 Rmu_sc0007859.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	3 cut(s)	105, 182, 331
AclWI	GGATC	1 cut(s)	443
AcyI	GRCGYC	2 cut(s)	336, 405
AfeI	AGCGCT	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	219, 240
AluBI	AGCT	4 cut(s)	229, 250, 388, 427
AluI	AGCT	4 cut(s)	229, 250, 388, 427
Alw26I	GTCTC	2 cut(s)	170, 322
AlwI	GGATC	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	390
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	3 cut(s)	210, 243, 467
ApeKI	GCWGC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	210, 244
AsuHPI	GGTGA	2 cut(s)	223, 244
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	344
BceAI	ACGGC	2 cut(s)	323, 397
BciT130I	CCWGG	2 cut(s)	221, 242
BcoDI	GTCTC	2 cut(s)	170, 322
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	221, 242
BmgT120I	GGNCC	2 cut(s)	210, 244
BmrFI	CCNGG	2 cut(s)	221, 242
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	224
BsaHI	GRCGYC	2 cut(s)	336, 405
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	221, 242
BseDI	CCNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	410
BseRI	GAGGAG	6 cut(s)	29, 32, 64, 146, 160, 296
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	3 cut(s)	23, 246, 351
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	212, 245, 469
BsiEI	CGRYCG	1 cut(s)	459
BsiSI	CCGG	2 cut(s)	264, 391
BsmAI	GTCTC	2 cut(s)	170, 322
BsmBI	CGTCTC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	212, 245, 469
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	430, 443, 448
BspACI	CCGC	3 cut(s)	105, 182, 331
BspANI	GGCC	3 cut(s)	212, 245, 469
BspCNI	CTCAG	1 cut(s)	409
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	333
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	430, 443, 448
BssNI	GRCGYC	2 cut(s)	336, 405
Bst2UI	CCWGG	2 cut(s)	221, 242
Bst4CI	ACNGT	2 cut(s)	235, 457
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	2 cut(s)	336, 405
BstC8I	GCNNGC	3 cut(s)	265, 348, 386
BstDEI	CTNAG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	3 cut(s)	433, 446, 451
BstMAI	GTCTC	2 cut(s)	170, 322
BstMBI	GATC	3 cut(s)	430, 443, 448
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 352, 363
BstNI	CCWGG	2 cut(s)	221, 242
BstSCI	CCNGG	2 cut(s)	219, 240
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	344
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	3 cut(s)	212, 245, 469
Cac8I	GCNNGC	3 cut(s)	265, 348, 386
CfoI	GCGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	210, 244
CseI	GACGC	1 cut(s)	344
CviAII	CATG	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	3 cut(s)	432, 445, 450
DpnII	GATC	3 cut(s)	430, 443, 448
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	219, 240
EcoT38I	GRGCYC	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 137
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	358
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	358
GsaI	CCCAGC	3 cut(s)	27, 250, 355
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	3 cut(s)	212, 245, 469
HapII	CCGG	2 cut(s)	264, 391
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	2 cut(s)	336, 405
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	394, 410, 463
HpaII	CCGG	2 cut(s)	264, 391
HphI	GGTGA	2 cut(s)	223, 244
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	6 cut(s)	175, 379, 399, 443, 448, 453
Hpy188III	TCNNGA	2 cut(s)	391, 460
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	6 cut(s)	12, 338, 383, 407, 410, 457
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	235, 457
HpyCH4IV	ACGT	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 352, 363
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	2 cut(s)	336, 405
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	390
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	430, 443, 448
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	405
MalI	GATC	3 cut(s)	432, 445, 450
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	3 cut(s)	430, 443, 448
MboII	GAAGA	6 cut(s)	41, 71, 78, 81, 84, 87
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	2 cut(s)	309, 402
MroI	TCCGGA	1 cut(s)	390
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	1 cut(s)	215
MspI	CCGG	2 cut(s)	264, 391
MspR9I	CCNGG	2 cut(s)	221, 242
MvaI	CCWGG	2 cut(s)	221, 242
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	33, 352, 363
NaeI	GCCGGC	1 cut(s)	265
NdeII	GATC	3 cut(s)	430, 443, 448
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	410, 463
PkrI	GCNGC	1 cut(s)	359
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	219, 240
PspFI	CCCAGC	3 cut(s)	23, 246, 351
PspGI	CCWGG	2 cut(s)	219, 240
PspPI	GGNCC	2 cut(s)	210, 244
PsuI	RGATCY	1 cut(s)	448
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	3 cut(s)	430, 443, 448
Sau96I	GGNCC	2 cut(s)	210, 244
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	221, 242
SduI	GDGCHC	1 cut(s)	368
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	3 cut(s)	105, 182, 331
StyD4I	CCNGG	2 cut(s)	219, 240
TaaI	ACNGT	2 cut(s)	235, 457
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	4 cut(s)	300, 408, 429, 459
TasI	AATT	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	410, 463
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	2 cut(s)	35, 304
XmiI	GTMKAC	1 cut(s)	13
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.