Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006012.1

Orthogroup ID

OG0025488

Physical Location & Seq

Genomic Coordinates Reverse (-)

72612 .. 72938

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006012.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ctgagaagctggaggcatttgctagctgggctaagattgtgcacattgatcgatattgattctacaaagattgggaagaacaagcagcctcatgtgtttgtttgtgctgatgtgaaaccggcgttgcaagggttgaacatgatattagaggggaaattggagaagcttaagcttgatttttcagcttggagggcagagctgaaagagcagaaattgaattttccattgggttacaagacttttggggagcccatccctcccaagtatgtcattcaggttcttgatgagttaactgaatggaaggctatcatgagcactagtgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

108

Amino Acids

12.33

Weight (kDa)

9.17

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025488)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000754.1_g000008 Rmu_sc0006012.1_g000013 Rmu_sc0006012.1_g000015

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	136, 217
AhlI	ACTAGT	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	6 cut(s)	9, 26, 166, 172, 185, 199
AluI	AGCT	6 cut(s)	9, 26, 166, 172, 185, 199
Alw21I	GWGCWC	2 cut(s)	44, 317
Alw44I	GTGCAC	1 cut(s)	40
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	217
AsuNHI	GCTAGC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	44, 317
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	23, 318
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	51
BseGI	GGATG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	44, 317
BsiSI	CCGG	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	44, 252, 317
Bsp143I	GATC	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	249
BspOI	GCTAGC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	2, 32
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 191, 205
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	51
CviAII	CATG	3 cut(s)	92, 139, 310
DdeI	CTNAG	2 cut(s)	2, 32
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	3 cut(s)	95, 142, 313
FaiI	YATR	4 cut(s)	93, 140, 267, 311
FatI	CATG	3 cut(s)	91, 138, 309
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	2 cut(s)	23, 318
GluI	GCNGC	1 cut(s)	86
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	31
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	3 cut(s)	95, 142, 313
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	2 cut(s)	164, 170
HinfI	GANTC	1 cut(s)	59
HpaI	GTTAAC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	42, 291
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	2 cut(s)	281, 310
Hpy8I	GTNNAC	2 cut(s)	42, 291
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	42, 127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 191, 205
HpyF3I	CTNAG	2 cut(s)	2, 32
Hsp92II	CATG	3 cut(s)	95, 142, 313
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	3 cut(s)	12, 132, 260
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	23, 318
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	44, 252, 317
MluCI	AATT	3 cut(s)	155, 212, 217
MnlI	CCTC	5 cut(s)	6, 99, 142, 183, 267
MseI	TTAA	2 cut(s)	168, 290
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	28, 191, 205
NdeII	GATC	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	95, 142, 313
NlaIV	GGNNCC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	168, 290
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	48
SduI	GDGCHC	3 cut(s)	44, 252, 317
SetI	ASST	7 cut(s)	11, 28, 168, 174, 187, 201, 279
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	3 cut(s)	155, 212, 217
SspMI	CTAG	2 cut(s)	23, 318
TaqI	TCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	155, 212, 217
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	168, 290
Tru9I	TTAA	2 cut(s)	168, 290
TseI	GCWGC	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	2 cut(s)	23, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.