Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006012.1

Orthogroup ID

OG0025488

Physical Location & Seq

Genomic Coordinates Forward (+)

74192 .. 74663

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006012.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgtctaggttgcccaaaagccctaatgagttccatctagagcagattgtgaggttggtgtcggagtcgaaaaaaccgatgttgtatgttggtggagggtgtttgaactcgaagattgggaagaacaagcagcctcatgtgtctgtttatgctgttgtgaaaccggcattgcaagggttgaacaggatattggaggggaaattggagaagcttaagcttgatttttcagcttggagggcggagctgaaagaccagaaattgaagtttccattgggttacaagacttttggggaggccattcctccccagtatgccattcaggttcttgatgagttaactgaagggaaggctattataagcactggtgtcgggcaacattacatgtgggatctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

9.43

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025488)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000754.1_g000008 Rmu_sc0006012.1_g000013 Rmu_sc0006012.1_g000015

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AciI	CCGC	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	360
AflII	CTTAAG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	106, 181, 262
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 254, 286
AluBI	AGCT	4 cut(s)	211, 217, 230, 244
AluI	AGCT	4 cut(s)	211, 217, 230, 244
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BfaI	CTAG	2 cut(s)	6, 38
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	307, 367
Bse3DI	GCAATG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	307, 367
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	164
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	307, 367
BssAI	RCCGGY	1 cut(s)	163
BssMI	GATC	1 cut(s)	388
BstAFI	CTTAAG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	163
CviAII	CATG	2 cut(s)	137, 382
CviJI	RGCY	8 cut(s)	21, 133, 211, 217, 230, 244, 296, 350
CviKI_1	RGCY	8 cut(s)	21, 133, 211, 217, 230, 244, 296, 350
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EciI	GGCGGA	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	360
FaeI	CATG	2 cut(s)	140, 385
FaiI	YATR	7 cut(s)	87, 138, 150, 312, 356, 383, 394
FatI	CATG	2 cut(s)	136, 381
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	6, 38
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	140, 385
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	2 cut(s)	209, 215
HinfI	GANTC	1 cut(s)	65
HpaI	GTTAAC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	38, 326
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	2 cut(s)	335, 340
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	140, 385
KspAI	GTTAAC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	169, 177, 266, 305, 320, 348
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	6, 38
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	2 cut(s)	124, 133
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	2 cut(s)	200, 257
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	45, 89, 144, 187, 228, 286, 312
MseI	TTAA	2 cut(s)	213, 335
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	140, 385
NspI	RCATGY	1 cut(s)	385
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	213, 335
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	74
SetI	ASST	7 cut(s)	11, 56, 213, 219, 232, 246, 324
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	200, 257
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	6, 38
TaqI	TCGA	2 cut(s)	68, 110
TasI	AATT	2 cut(s)	200, 257
Tru1I	TTAA	2 cut(s)	213, 335
Tru9I	TTAA	2 cut(s)	213, 335
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	130
TspRI	CASTG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	37
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	2 cut(s)	6, 38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.