Rmu_sc0006050.1_g000007

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006050.1
OG0025343
Physical Location & Seq
Forward (+)
17497 .. 17865
369 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atgccctcgatcttcttcttcttggccttcctcttcttcaccaactctgacctccacttcgccctcctttggcaacacgttcctctccactcctttcgctacgtctaccgctccctcttcacctcctccactttcaacaagtcccggcccaccaccgagtccgatgcggagttgactctgatgggattcaaggtcaagtacaagagctttatcgaaatcctctccaaatctaccagtctctggaagcgatacctcgctaggggaaggtacgccatgatgccagaggtcagtttcgatcagttccgggtcgggtcacagttctttttgctcacgcgccatcacacattggtggttttgaaggattggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

122

Amino Acids

14.58

Weight (kDa)

9.99

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025343)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024644 RLG00000035389
rosa_multiflora Rmu_sc0006050.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 334
AciI CCGC 2 cut(s) 109, 167
AfaI GTAC 2 cut(s) 200, 269
AfiI CCNNNNNNNGG 3 cut(s) 69, 240, 259
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 136, 190, 358
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 2 cut(s) 24, 146
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 2 cut(s) 145, 305
AsuHPI GGTGA 2 cut(s) 31, 112
BccI CCATC 2 cut(s) 175, 345
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcnI CCSGG 2 cut(s) 145, 305
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 258
Bme1390I CCNGG 2 cut(s) 145, 305
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 145, 305
BmsI GCATC 2 cut(s) 154, 267
BpuMI CCSGG 2 cut(s) 145, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 240, 259
Bse1I ACTGG 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 69, 240, 259
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 2 cut(s) 26, 148
BsiSI CCGG 2 cut(s) 145, 304
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 69, 240, 259
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 2 cut(s) 26, 148
Bsp143I GATC 2 cut(s) 9, 295
BspACI CCGC 2 cut(s) 109, 167
BspANI GGCC 2 cut(s) 26, 148
BspFNI CGCG 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 234
BssMI GATC 2 cut(s) 9, 295
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 38, 122
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 12, 298
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 9, 295
BstSCI CCNGG 2 cut(s) 143, 303
BstUI CGCG 1 cut(s) 334
BsuRI GGCC 2 cut(s) 26, 148
CaiI CAGNNNCTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 199, 268
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 26, 148, 207
CviKI_1 RGCY 3 cut(s) 26, 148, 207
CviQI GTAC 2 cut(s) 199, 268
DpnI GATC 2 cut(s) 11, 297
DpnII GATC 2 cut(s) 9, 295
Eam1104I CTCTTC 2 cut(s) 38, 122
EarI CTCTTC 2 cut(s) 38, 122
FaeI CATG 1 cut(s) 277
FaiI YATR 1 cut(s) 275
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 273
FblI GTMKAC 1 cut(s) 105
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 335
HaeIII GGCC 2 cut(s) 26, 148
HapII CCGG 2 cut(s) 145, 304
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 3 cut(s) 158, 175, 186
HpaII CCGG 2 cut(s) 145, 304
HphI GGTGA 2 cut(s) 31, 112
Hpy166II GTNNAC 2 cut(s) 106, 174
Hpy188I TCNGA 3 cut(s) 49, 163, 180
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 106, 174
HpyAV CCTTC 3 cut(s) 37, 258, 352
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 2 cut(s) 78, 102
HpySE526I ACGT 2 cut(s) 78, 102
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 9, 295
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 5 cut(s) 158, 226, 247, 294, 317
LweI GCATC 2 cut(s) 154, 267
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 78, 102
MaeIII GTNAC 1 cut(s) 312
MalI GATC 2 cut(s) 11, 297
MbiI CCGCTC 1 cut(s) 111
MboI GATC 2 cut(s) 9, 295
MboII GAAGA 6 cut(s) 4, 7, 10, 25, 28, 109
MlyI GAGTC 2 cut(s) 167, 169
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 2 cut(s) 145, 304
MspR9I CCNGG 2 cut(s) 145, 305
MvnI CGCG 1 cut(s) 334
NciI CCSGG 2 cut(s) 145, 305
NdeII GATC 2 cut(s) 9, 295
NlaIII CATG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 312
OliI CACNNNNGTG 1 cut(s) 347
PfeI GAWTC 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 240
PleI GAGTC 2 cut(s) 166, 169
PpsI GAGTC 2 cut(s) 166, 169
PspPI GGNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 240
RsaI GTAC 2 cut(s) 200, 269
RsaNI GTAC 2 cut(s) 199, 268
RseI CAYNNNNRTG 1 cut(s) 347
Sau3AI GATC 2 cut(s) 9, 295
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 2 cut(s) 167, 169
ScrFI CCNGG 2 cut(s) 145, 305
SetI ASST 9 cut(s) 54, 81, 105, 125, 195, 209, 255, 269, 288
SfaNI GCATC 2 cut(s) 154, 267
SmiMI CAYNNNNRTG 1 cut(s) 347
SsiI CCGC 2 cut(s) 109, 167
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 143, 303
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 2 cut(s) 81, 105
TaqI TCGA 3 cut(s) 8, 213, 294
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 186
TseFI GTSAC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.