Rmu_sc0006065.1_g000017

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006065.1
OG0030978
Physical Location & Seq
Reverse (-)
93280 .. 93942
663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
atgagtactgagagtagtcatccggggcgctcctttggggtgccatcattccaagaacaaatcagtcgtgatttcaagaaatttgagtcgcatccggatgacaaagactccggcacatcggcagttgctggcaaaccagaaaatgagaaatctgatgttaatctactgatagcgacacttatagcaacagttacattcgaggccggtctcgccccgccaggaggatatggagacgacggaaagataattttacaagacaatacaaatttcaaatggttttttacattgaacgttatctcgttcctactctcaagcctggttcttatccgagaatctgggccatgtttgggctccagactctccaaagtacttggtccattattgttcgctctccaatctgaaaccatcattacggcttccctttacggaatgcttttagcattttggcagggcacaacagcagggctaaacaaatcaaacacctcaatcaaatcgccctggcctggtcctctgacagtagcagctggaatagctttaatgatgtttggtttgggcccaggtttatttcaagcctgctcgaagaccagggatgcacttcgtgaaaaaagatcggactccggaggcgcgagattccgtggtatattctctttttggtcagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

220

Amino Acids

23.68

Weight (kDa)

7.76

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 47 - 153 1.5e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030978)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032998
rosa_multiflora Rmu_sc0006065.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccII CGCG 1 cut(s) 626
AccIII TCCGGA 2 cut(s) 94, 617
AciI CCGC 1 cut(s) 215
AclI AACGTT 1 cut(s) 291
AcsI RAATTY 2 cut(s) 80, 265
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 2 cut(s) 7, 369
AfiI CCNNNNNNNGG 3 cut(s) 221, 347, 503
AgsI TTSAA 4 cut(s) 76, 271, 289, 569
AjnI CCWGG 6 cut(s) 217, 315, 497, 502, 556, 584
AluBI AGCT 2 cut(s) 524, 533
AluI AGCT 2 cut(s) 524, 533
Alw26I GTCTC 2 cut(s) 212, 225
AlwNI CAGNNNCTG 1 cut(s) 128
Aor13HI TCCGGA 2 cut(s) 94, 617
AoxI GGCC 4 cut(s) 201, 338, 500, 553
ApaI GGGCCC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 2 cut(s) 80, 265
AspLEI GCGC 2 cut(s) 30, 626
AspS9I GGNCC 5 cut(s) 338, 374, 506, 553, 554
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 2 cut(s) 374, 506
BaeGI GKGCMC 2 cut(s) 455, 557
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 353, 557
BbsI GAAGAC 1 cut(s) 587
BbvI GCAGC 1 cut(s) 533
BccI CCATC 2 cut(s) 52, 413
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 6 cut(s) 219, 317, 499, 504, 558, 586
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 212, 225
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
BmcAI AGTACT 2 cut(s) 7, 369
Bme1390I CCNGG 7 cut(s) 24, 219, 317, 499, 504, 558, 586
Bme18I GGWCC 2 cut(s) 374, 506
BmgT120I GGNCC 5 cut(s) 338, 374, 506, 553, 554
BmiI GGNNCC 3 cut(s) 42, 352, 555
BmrFI CCNGG 7 cut(s) 24, 219, 317, 499, 504, 558, 586
BmsI GCATC 2 cut(s) 100, 580
BpiI GAAGAC 1 cut(s) 587
BpmI CTGGAG 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 5 cut(s) 23, 497, 556, 585, 634
BsaWI WCCGGW 2 cut(s) 94, 617
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 347, 503
Bse118I RCCGGY 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 2 cut(s) 94, 617
BseBI CCWGG 6 cut(s) 219, 317, 499, 504, 558, 586
BseDI CCNNGG 5 cut(s) 23, 497, 556, 585, 634
BseGI GGATG 4 cut(s) 19, 91, 103, 595
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 221, 347, 503
BseSI GKGCMC 2 cut(s) 455, 557
BseXI GCAGC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 626
BshFI GGCC 4 cut(s) 203, 340, 502, 555
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 5 cut(s) 23, 95, 111, 204, 618
BslI CCNNNNNNNGG 3 cut(s) 221, 347, 503
BsmAI GTCTC 2 cut(s) 212, 225
BsmBI CGTCTC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 4 cut(s) 203, 340, 502, 555
Bso31I GGTCTC 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 553
Bsp1286I GDGCHC 3 cut(s) 353, 455, 557
Bsp13I TCCGGA 2 cut(s) 94, 617
Bsp143I GATC 1 cut(s) 608
BspACI CCGC 1 cut(s) 215
BspANI GGCC 4 cut(s) 203, 340, 502, 555
BspEI TCCGGA 2 cut(s) 94, 617
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 3 cut(s) 42, 352, 555
BspT107I GGYRCC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 23, 497, 556, 585, 634
BssMI GATC 1 cut(s) 608
Bst2UI CCWGG 6 cut(s) 219, 317, 499, 504, 558, 586
Bst4CI ACNGT 2 cut(s) 190, 517
BstC8I GCNNGC 2 cut(s) 130, 574
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 4 cut(s) 19, 91, 103, 595
BstFNI CGCG 1 cut(s) 626
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 2 cut(s) 30, 626
BstKTI GATC 1 cut(s) 611
BstMAI GTCTC 2 cut(s) 212, 225
BstMBI GATC 1 cut(s) 608
BstMWI GCNNNNNNNGC 2 cut(s) 209, 530
BstNI CCWGG 6 cut(s) 219, 317, 499, 504, 558, 586
BstSCI CCNGG 7 cut(s) 22, 217, 315, 497, 502, 556, 584
BstSLI GKGCMC 2 cut(s) 455, 557
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 533
BstV2I GAAGAC 1 cut(s) 587
BsuRI GGCC 4 cut(s) 203, 340, 502, 555
BtgI CCRYGG 1 cut(s) 634
BtsCI GGATG 4 cut(s) 19, 91, 103, 595
Cac8I GCNNGC 2 cut(s) 130, 574
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 2 cut(s) 30, 626
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 338, 374, 506, 553, 554
Csp6I GTAC 2 cut(s) 6, 368
CviAII CATG 1 cut(s) 342
CviQI GTAC 2 cut(s) 6, 368
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 610
DpnII GATC 1 cut(s) 608
DraIII CACNNNGTG 1 cut(s) 599
Eco24I GRGCYC 2 cut(s) 353, 557
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 374, 506
EcoRII CCWGG 6 cut(s) 217, 315, 497, 502, 556, 584
EcoT38I GRGCYC 2 cut(s) 353, 557
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 1 cut(s) 345
FaiI YATR 4 cut(s) 182, 228, 343, 641
FatI CATG 1 cut(s) 341
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 4 cut(s) 6, 78, 110, 602
FriOI GRGCYC 2 cut(s) 353, 557
Fsp4HI GCNGC 1 cut(s) 522
GlaI GCGC 2 cut(s) 29, 625
GluI GCNGC 1 cut(s) 522
GsuI CTGGAG 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 4 cut(s) 203, 340, 502, 555
HapII CCGG 5 cut(s) 23, 95, 111, 204, 618
HhaI GCGC 2 cut(s) 30, 626
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 2 cut(s) 28, 624
HinP1I GCGC 2 cut(s) 28, 624
HinfI GANTC 6 cut(s) 86, 107, 332, 357, 614, 630
HpaII CCGG 5 cut(s) 23, 95, 111, 204, 618
Hpy188I TCNGA 6 cut(s) 154, 329, 400, 513, 613, 658
Hpy188III TCNNGA 6 cut(s) 68, 76, 95, 354, 599, 618
Hpy99I CGWCG 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 190, 517
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 530
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 2 cut(s) 28, 624
Kpn2I TCCGGA 2 cut(s) 94, 617
Kzo9I GATC 1 cut(s) 608
LmnI GCTCC 2 cut(s) 35, 356
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 2 cut(s) 100, 580
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 610
MboI GATC 1 cut(s) 608
MboII GAAGA 1 cut(s) 592
MhlI GDGCHC 3 cut(s) 353, 455, 557
MluCI AATT 3 cut(s) 80, 246, 265
MlyI GAGTC 4 cut(s) 95, 101, 351, 608
MnlI CCTC 5 cut(s) 193, 215, 493, 519, 614
MroI TCCGGA 2 cut(s) 94, 617
MseI TTAA 2 cut(s) 159, 536
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 5 cut(s) 23, 95, 111, 204, 618
MspR9I CCNGG 7 cut(s) 24, 219, 317, 499, 504, 558, 586
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 6 cut(s) 219, 317, 499, 504, 558, 586
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 2 cut(s) 209, 530
NciI CCSGG 1 cut(s) 24
NdeII GATC 1 cut(s) 608
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 3 cut(s) 42, 352, 555
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 332, 630
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 4 cut(s) 94, 101, 351, 608
PpsI GAGTC 4 cut(s) 94, 101, 351, 608
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 6 cut(s) 217, 315, 497, 502, 556, 584
PspGI CCWGG 6 cut(s) 217, 315, 497, 502, 556, 584
PspN4I GGNNCC 3 cut(s) 42, 352, 555
PspOMI GGGCCC 1 cut(s) 553
PspPI GGNCC 5 cut(s) 338, 374, 506, 553, 554
PstNI CAGNNNCTG 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 7, 369
RsaNI GTAC 2 cut(s) 6, 368
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 159, 536
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 1 cut(s) 608
Sau96I GGNCC 5 cut(s) 338, 374, 506, 553, 554
ScaI AGTACT 2 cut(s) 7, 369
SchI GAGTC 4 cut(s) 95, 101, 351, 608
ScrFI CCNGG 7 cut(s) 24, 219, 317, 499, 504, 558, 586
SduI GDGCHC 3 cut(s) 353, 455, 557
SetI ASST 5 cut(s) 294, 485, 526, 535, 562
SfaNI GCATC 2 cut(s) 100, 580
SinI GGWCC 2 cut(s) 374, 506
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 3 cut(s) 80, 246, 265
SsiI CCGC 1 cut(s) 215
StyD4I CCNGG 7 cut(s) 22, 217, 315, 497, 502, 556, 584
TaaI ACNGT 2 cut(s) 190, 517
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 198, 578
TasI AATT 3 cut(s) 80, 246, 265
TatI WGTACW 2 cut(s) 5, 367
TfiI GAWTC 2 cut(s) 332, 630
Tru1I TTAA 2 cut(s) 159, 536
Tru9I TTAA 2 cut(s) 159, 536
TseI GCWGC 1 cut(s) 521
TspGWI ACGGA 3 cut(s) 252, 441, 623
VpaK11BI GGWCC 2 cut(s) 374, 506
XapI RAATTY 2 cut(s) 80, 265
ZrmI AGTACT 2 cut(s) 7, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.