Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006110.1

Orthogroup ID

OG0024161

Physical Location & Seq

Genomic Coordinates Forward (+)

2060 .. 2731

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006110.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgccatgcttcagcttaacccagtcaaagaactcctgcttgcggtccaacttcatccgggccggcctccggcccaccgtcacggacctcaaagacggcggcaccaccatgcactgctgggtccccaaatccctcaacccctccaaacccaacctcctcctcctccacggcttcggcgtcaacgcaatgtggcaattcgctgacctcatccgccacgtcacccctcactacaacgtctacgtccccgacctcgtctttttcggcgactcctccaccacccgccccgaccgctccgagacgttccaggccgagtgcgtcatgcgggtcatggaggcccactccgtccgggccttcagcctcgtgggcctcagctacggcgggttcgtcgggtacaggctggcggcccagtacaaggaggccgtcgagagggtggtgatttgctgcgccgcggtgtgtatggaggagaaggacctgcaggaaggagtgtttagggtttcggatttggacgaggccgccagcattttgatgccgcagacgccggacaagctccgggagcttgtcaagtgcacttttttcaggccgccgccgttggggtttatgccgtcgtgcttgctcagagatttcatcgaggtaaaaactgttgaaaagttaattaatttattattgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016021 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0031224 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044425 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_4

Protein Analysis

223

Amino Acids

25.06

Weight (kDa)

7.55

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024161)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37170 FvH4_5g37170
rosa_multiflora	Rmu_sc0006110.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	337
AcyI	GRCGYC	2 cut(s)	177, 536
AfaI	GTAC	2 cut(s)	392, 410
AfiI	CCNNNNNNNGG	5 cut(s)	42, 69, 412, 426, 590
AgsI	TTSAA	1 cut(s)	644
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	15, 372, 547, 556
AluI	AGCT	4 cut(s)	15, 372, 547, 556
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	565
ApeKI	GCWGC	1 cut(s)	441
AseI	ATTAAT	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	446
AsuC2I	CCSGG	3 cut(s)	59, 347, 551
AsuHPI	GGTGA	2 cut(s)	211, 445
AvaII	GGWCC	4 cut(s)	45, 85, 121, 469
BaeGI	GKGCMC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	428
BceAI	ACGGC	6 cut(s)	112, 184, 391, 404, 571, 586
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	3 cut(s)	59, 347, 551
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	480
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
BlsI	GCNGC	8 cut(s)	101, 403, 443, 448, 514, 531, 582, 585
Bme1390I	CCNGG	4 cut(s)	59, 305, 347, 551
Bme18I	GGWCC	4 cut(s)	45, 85, 121, 469
BmgBI	CACGTC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	103, 122, 123
BmrFI	CCNGG	4 cut(s)	59, 305, 347, 551
BmrI	ACTGGG	2 cut(s)	16, 400
BmsI	GCATC	1 cut(s)	516
BmuI	ACTGGG	2 cut(s)	16, 400
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu10I	CCTNAGC	1 cut(s)	368
BpuMI	CCSGG	3 cut(s)	59, 347, 551
BsaHI	GRCGYC	2 cut(s)	177, 536
BsaJI	CCNNGG	2 cut(s)	166, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 69, 412, 426, 590
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	22, 406
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	166, 447
BseGI	GGATG	2 cut(s)	54, 207
BseLI	CCNNNNNNNGG	5 cut(s)	42, 69, 412, 426, 590
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	382, 628
BseNI	ACTGG	2 cut(s)	22, 406
BseRI	GAGGAG	5 cut(s)	146, 149, 152, 259, 476
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
BslFI	GGGAC	2 cut(s)	107, 227
BslI	CCNNNNNNNGG	5 cut(s)	42, 69, 412, 426, 590
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	107, 227
Bsp1286I	GDGCHC	1 cut(s)	569
BspCNI	CTCAG	2 cut(s)	381, 627
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	3 cut(s)	103, 122, 123
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	22, 406
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	166, 447
BssNI	GRCGYC	2 cut(s)	177, 536
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	79, 640
BstACI	GRCGYC	2 cut(s)	177, 536
BstC8I	GCNNGC	5 cut(s)	41, 64, 399, 517, 611
BstDEI	CTNAG	2 cut(s)	368, 614
BstDSI	CCRYGG	2 cut(s)	166, 447
BstF5I	GGATG	2 cut(s)	54, 207
BstFNI	CGCG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	446
BstMAI	GTCTC	1 cut(s)	290
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 363, 535, 544, 553
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	4 cut(s)	57, 303, 345, 549
BstSFI	CTRYAG	1 cut(s)	473
BstSLI	GKGCMC	1 cut(s)	569
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	428
BtgI	CCRYGG	2 cut(s)	166, 447
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	54, 207
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	5 cut(s)	41, 64, 399, 517, 611
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	62
Cfr42I	CCGCGG	1 cut(s)	450
CseI	GACGC	3 cut(s)	166, 304, 544
Csp6I	GTAC	2 cut(s)	391, 409
CviAII	CATG	4 cut(s)	6, 109, 319, 328
CviQI	GTAC	2 cut(s)	391, 409
DdeI	CTNAG	2 cut(s)	368, 614
EciI	GGCGGA	1 cut(s)	200
Eco47I	GGWCC	4 cut(s)	45, 85, 121, 469
Eco57I	CTGAAG	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	121, 469
EcoRII	CCWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	4 cut(s)	9, 112, 322, 331
FaiI	YATR	6 cut(s)	7, 110, 320, 329, 458, 599
FaqI	GGGAC	2 cut(s)	107, 227
FatI	CATG	4 cut(s)	5, 108, 318, 327
FauI	CCCGC	3 cut(s)	287, 315, 371
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
FokI	GGATG	2 cut(s)	41, 194
FseI	GGCCGGCC	1 cut(s)	66
Fsp4HI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
GsaI	CCCAGC	1 cut(s)	121
HapII	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
HgaI	GACGC	3 cut(s)	166, 304, 544
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	2 cut(s)	177, 536
Hin1II	CATG	4 cut(s)	9, 112, 322, 331
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
HphI	GGTGA	2 cut(s)	211, 445
Hpy166II	GTNNAC	3 cut(s)	181, 238, 567
Hpy188I	TCNGA	3 cut(s)	295, 499, 617
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	3 cut(s)	181, 238, 567
Hpy99I	CGWCG	3 cut(s)	389, 425, 607
HpyAV	CCTTC	3 cut(s)	361, 460, 473
HpyCH4III	ACNGT	2 cut(s)	79, 640
HpyCH4IV	ACGT	4 cut(s)	216, 234, 240, 299
HpyCH4V	TGCA	3 cut(s)	112, 475, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 363, 535, 544, 553
HpyF3I	CTNAG	2 cut(s)	368, 614
HpySE526I	ACGT	4 cut(s)	216, 234, 240, 299
Hsp92I	GRCGYC	2 cut(s)	177, 536
Hsp92II	CATG	4 cut(s)	9, 112, 322, 331
HspAI	GCGC	1 cut(s)	444
KflI	GGGWCCC	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
KspI	CCGCGG	1 cut(s)	450
LmnI	GCTCC	3 cut(s)	296, 552, 553
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	1 cut(s)	516
MaeII	ACGT	4 cut(s)	216, 234, 240, 299
MaeIII	GTNAC	2 cut(s)	79, 217
MbiI	CCGCTC	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	3 cut(s)	194, 651, 655
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	4 cut(s)	17, 650, 654, 670
MslI	CAYNNNNRTG	2 cut(s)	107, 524
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
MspR9I	CCNGG	4 cut(s)	59, 305, 347, 551
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	5 cut(s)	288, 363, 535, 544, 553
NaeI	GCCGGC	1 cut(s)	64
NciI	CCSGG	3 cut(s)	59, 347, 551
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	4 cut(s)	9, 112, 322, 331
NlaIV	GGNNCC	3 cut(s)	103, 122, 123
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	79, 217
PacI	TTAATTAA	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 381
PdiI	GCCGGC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	8 cut(s)	101, 403, 443, 448, 514, 531, 582, 585
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	2 cut(s)	121, 469
PshBI	ATTAAT	1 cut(s)	654
Psp5II	RGGWCCY	2 cut(s)	121, 469
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	103, 122, 123
PspPPI	RGGWCCY	2 cut(s)	121, 469
PstI	CTGCAG	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	251
RigI	GGCCGGCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	392, 410
RsaNI	GTAC	2 cut(s)	391, 409
RseI	CAYNNNNRTG	2 cut(s)	107, 524
SacII	CCGCGG	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	17, 650, 654, 670
SatI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
SbfI	CCTGCAGG	1 cut(s)	477
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	4 cut(s)	59, 305, 347, 551
SdaI	CCTGCAGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	473
Sfr303I	CCGCGG	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	450
SinI	GGWCC	4 cut(s)	45, 85, 121, 469
SmiMI	CAYNNNNRTG	2 cut(s)	107, 524
Sse8387I	CCTGCAGG	1 cut(s)	477
Sse9I	AATT	3 cut(s)	194, 651, 655
StyD4I	CCNGG	4 cut(s)	57, 303, 345, 549
TaaI	ACNGT	2 cut(s)	79, 640
TaiI	ACGT	4 cut(s)	219, 237, 243, 302
TaqI	TCGA	2 cut(s)	423, 627
TasI	AATT	3 cut(s)	194, 651, 655
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	7 cut(s)	102, 404, 449, 515, 532, 583, 586
Tru1I	TTAA	4 cut(s)	17, 650, 654, 670
Tru9I	TTAA	4 cut(s)	17, 650, 654, 670
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	79, 217
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	2 cut(s)	79, 217
TspDTI	ATGAA	2 cut(s)	43, 613
TspGWI	ACGGA	2 cut(s)	98, 331
TspRI	CASTG	1 cut(s)	119
Tth111I	GACNNNGTC	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	565
VpaK11BI	GGWCC	4 cut(s)	45, 85, 121, 469
VspI	ATTAAT	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.