Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016353

Physical Location & Seq

Genomic Coordinates Reverse (-)

27235540 .. 27239261

Gene Structure 3722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37170.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCCATGTTTCAGCTTCGCCGAGTCAAAGAACTCCTGCTTCCGTTCCAACTTCATCCGCGCCGGCCTCTGCTCCACCCTCACCGACCTCAACGACGGCGGCACCACCATGCACTGCTGGGTCCCCATCTCCCCAAACTCTTCCAAACCCAACCTCCTCCTCCTTCACGGCCTCGGCCCCAACGCAATGTGGCAGTTCGCTGACCTCATCCACCACGTCACTCCCCACTTCAACGTCTACGTCCCCGACCTCCTCTTCTTCGGCGACTCCTCCACCGCCCGGCCCGACCGCTCCGAGTCTTTCCAGGCCGAATGCGTCATGCGGGTCATGGAGGCCCACTCCGTTCGGGTTTTCAGCCTGGTGGGCCTCAGCTACGGCGGGTTTGTAGGGTACACGCTGGCGGCGCAGTACAAGGAGGCGGTGGAGAGGGTGGTGATTTGCTGCGCCGCCGTGTGTATGGAGGAGAAGGACTTGAGGGAAGGGGTGTTTACGGTATCGGATTTGGATGAGGCTGCTAGCATTCTGGTGCCGCAGACGCCGAGCAAGCTTAAGGAGCTGGTTAAGCATACCTTCTTCCGGCCGCCGCCAATGGGGCTTATGCCGTCGTGCTTGCTCAGGGATTTCATCGAGGATCAGCTACTAGTCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016021 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0031224 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044425 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_4

Protein Analysis

218

Amino Acids

24.13

Weight (kDa)

5.47

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	50 - 156	3.3e-16	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	52 - 194	1.2e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37170
malus_domestica	MD08G1183900.v1.1 MD15G1370400.v1.1
prunus_persica	Prupe.1G518000_v2.0.a1
pyrus_communis	pycom08g15770 pycom15g33210
rosa_chinensis	RchiOBHm_Chr7g0238751
rosa_laevigata	RLG00000000815
rosa_multiflora	Rmu_sc0010914.1_g000009
rosa_roxburghii	Rroxscaffold_3G00221580
rosa_rugosa	Rorug07G0323400
rosa_samantha	Rh7AG477700 Rh7CG495700 Rh7DG462700
rosa_wichuraiana	Rw7G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	101, 526
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	60
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	2 cut(s)	392, 410
AfiI	CCNNNNNNNGG	3 cut(s)	279, 576, 590
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	303, 357
AluBI	AGCT	5 cut(s)	15, 372, 547, 556, 637
AluI	AGCT	5 cut(s)	15, 372, 547, 556, 637
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	8 cut(s)	64, 169, 175, 281, 306, 333, 364, 578
ApeKI	GCWGC	2 cut(s)	441, 512
AspLEI	GCGC	3 cut(s)	62, 406, 446
AspS9I	GGNCC	5 cut(s)	121, 176, 282, 334, 364
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	73, 445
AsuNHI	GCTAGC	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	2 cut(s)	101, 526
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	428, 499
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	5 cut(s)	112, 184, 391, 434, 586
BciT130I	CCWGG	2 cut(s)	305, 359
BcnI	CCSGG	1 cut(s)	280
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	2 cut(s)	516, 641
BfrI	CTTAAG	1 cut(s)	548
BglI	GCCNNNNNGGC	2 cut(s)	363, 592
BisI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
BlsI	GCNGC	8 cut(s)	101, 403, 443, 448, 514, 531, 582, 585
Bme1390I	CCNGG	3 cut(s)	280, 305, 359
Bme18I	GGWCC	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	5 cut(s)	121, 176, 282, 334, 364
BmiI	GGNNCC	5 cut(s)	103, 122, 123, 178, 528
BmrFI	CCNGG	3 cut(s)	280, 305, 359
BmtI	GCTAGC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu10I	CCTNAGC	2 cut(s)	368, 614
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 576, 590
Bse118I	RCCGGY	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	305, 359
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	3 cut(s)	54, 207, 511
BseLI	CCNNNNNNNGG	3 cut(s)	279, 576, 590
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	382, 628
BseRI	GAGGAG	5 cut(s)	146, 149, 242, 259, 476
BseX3I	CGGCCG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	428, 499
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	2 cut(s)	289, 581
BshFI	GGCC	8 cut(s)	66, 171, 177, 283, 308, 335, 366, 580
BshNI	GGYRCC	2 cut(s)	101, 526
BsiEI	CGRYCG	2 cut(s)	289, 581
BsiSI	CCGG	3 cut(s)	63, 280, 577
BslFI	GGGAC	2 cut(s)	107, 227
BslI	CCNNNNNNNGG	3 cut(s)	279, 576, 590
BsmFI	GGGAC	2 cut(s)	107, 227
BsmI	GAATGC	2 cut(s)	317, 519
BsnI	GGCC	8 cut(s)	66, 171, 177, 283, 308, 335, 366, 580
Bsp143I	GATC	1 cut(s)	631
BspANI	GGCC	8 cut(s)	66, 171, 177, 283, 308, 335, 366, 580
BspCNI	CTCAG	2 cut(s)	381, 627
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	5 cut(s)	103, 122, 123, 178, 528
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	639
BspT107I	GGYRCC	2 cut(s)	101, 526
BspTI	CTTAAG	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	631
BssNI	GRCGYC	1 cut(s)	536
Bst2UI	CCWGG	2 cut(s)	305, 359
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	145, 260
BstACI	GRCGYC	1 cut(s)	536
BstAFI	CTTAAG	1 cut(s)	548
BstC8I	GCNNGC	5 cut(s)	64, 399, 517, 545, 611
BstDEI	CTNAG	2 cut(s)	368, 614
BstF5I	GGATG	3 cut(s)	54, 207, 511
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	62, 406, 446
BstKTI	GATC	1 cut(s)	634
BstMBI	GATC	1 cut(s)	631
BstMCI	CGRYCG	2 cut(s)	289, 581
BstMWI	GCNNNNNNNGC	7 cut(s)	363, 403, 535, 544, 553, 562, 592
BstNI	CCWGG	2 cut(s)	305, 359
BstSCI	CCNGG	3 cut(s)	278, 303, 357
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	428, 499
BstZI	CGGCCG	1 cut(s)	578
BsuRI	GGCC	8 cut(s)	66, 171, 177, 283, 308, 335, 366, 580
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	54, 207, 511
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	5 cut(s)	64, 399, 517, 545, 611
CfoI	GCGC	3 cut(s)	62, 406, 446
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	5 cut(s)	121, 176, 282, 334, 364
CseI	GACGC	2 cut(s)	304, 544
Csp6I	GTAC	2 cut(s)	391, 409
CviAII	CATG	4 cut(s)	6, 109, 319, 328
CviQI	GTAC	2 cut(s)	391, 409
DdeI	CTNAG	2 cut(s)	368, 614
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	578
EagI	CGGCCG	1 cut(s)	578
Eam1104I	CTCTTC	2 cut(s)	145, 260
EarI	CTCTTC	2 cut(s)	145, 260
EclXI	CGGCCG	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	303, 357
FaeI	CATG	4 cut(s)	9, 112, 322, 331
FaiI	YATR	7 cut(s)	7, 110, 320, 329, 458, 567, 599
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	2 cut(s)	107, 227
FatI	CATG	4 cut(s)	5, 108, 318, 327
FauI	CCCGC	2 cut(s)	315, 371
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
FokI	GGATG	3 cut(s)	41, 194, 518
Fsp4HI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
FspBI	CTAG	2 cut(s)	516, 641
GlaI	GCGC	3 cut(s)	61, 405, 445
GluI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	8 cut(s)	66, 171, 177, 283, 308, 335, 366, 580
HapII	CCGG	3 cut(s)	63, 280, 577
HgaI	GACGC	2 cut(s)	304, 544
HhaI	GCGC	3 cut(s)	62, 406, 446
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	4 cut(s)	9, 112, 322, 331
Hin6I	GCGC	3 cut(s)	60, 404, 444
HinP1I	GCGC	3 cut(s)	60, 404, 444
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	3 cut(s)	23, 266, 296
HpaII	CCGG	3 cut(s)	63, 280, 577
HphI	GGTGA	2 cut(s)	73, 445
Hpy166II	GTNNAC	3 cut(s)	238, 393, 489
Hpy188I	TCNGA	2 cut(s)	295, 499
Hpy8I	GTNNAC	3 cut(s)	238, 393, 489
Hpy99I	CGWCG	2 cut(s)	98, 607
HpyAV	CCTTC	4 cut(s)	173, 460, 473, 580
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	3 cut(s)	216, 234, 240
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	7 cut(s)	363, 403, 535, 544, 553, 562, 592
HpyF3I	CTNAG	2 cut(s)	368, 614
HpySE526I	ACGT	3 cut(s)	216, 234, 240
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	4 cut(s)	9, 112, 322, 331
HspAI	GCGC	3 cut(s)	60, 404, 444
KflI	GGGWCCC	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	631
LmnI	GCTCC	3 cut(s)	77, 296, 553
Lsp1109I	GCAGC	2 cut(s)	428, 499
MaeI	CTAG	2 cut(s)	516, 641
MaeII	ACGT	3 cut(s)	216, 234, 240
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	633
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	1 cut(s)	631
MboII	GAAGA	4 cut(s)	132, 247, 250, 565
MlyI	GAGTC	3 cut(s)	32, 260, 305
MmeI	TCCRAC	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	2 cut(s)	549, 561
MslI	CAYNNNNRTG	2 cut(s)	107, 524
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	3 cut(s)	63, 280, 577
MspR9I	CCNGG	3 cut(s)	280, 305, 359
Mva1269I	GAATGC	2 cut(s)	317, 519
MvaI	CCWGG	2 cut(s)	305, 359
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	7 cut(s)	363, 403, 535, 544, 553, 562, 592
NaeI	GCCGGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	1 cut(s)	631
NgoMIV	GCCGGC	1 cut(s)	62
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	9, 112, 322, 331
NlaIV	GGNNCC	5 cut(s)	103, 122, 123, 178, 528
NmeAIII	GCCGAG	3 cut(s)	46, 153, 564
NmuCI	GTSAC	1 cut(s)	217
PctI	GAATGC	2 cut(s)	317, 519
PdiI	GCCGGC	1 cut(s)	64
PkrI	GCNGC	8 cut(s)	101, 403, 443, 448, 514, 531, 582, 585
PleI	GAGTC	3 cut(s)	31, 260, 304
PpsI	GAGTC	3 cut(s)	31, 260, 304
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	303, 357
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	303, 357
PspN4I	GGNNCC	5 cut(s)	103, 122, 123, 178, 528
PspPI	GGNCC	5 cut(s)	121, 176, 282, 334, 364
PspPPI	RGGWCCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	392, 410
RsaNI	GTAC	2 cut(s)	391, 409
RseI	CAYNNNNRTG	2 cut(s)	107, 524
SaqAI	TTAA	2 cut(s)	549, 561
SatI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	5 cut(s)	121, 176, 282, 334, 364
SchI	GAGTC	3 cut(s)	32, 260, 305
ScrFI	CCNGG	3 cut(s)	280, 305, 359
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	107, 524
SmlI	CTYRAG	2 cut(s)	472, 548
SmoI	CTYRAG	2 cut(s)	472, 548
SpeI	ACTAGT	1 cut(s)	640
SspMI	CTAG	2 cut(s)	516, 641
StyD4I	CCNGG	3 cut(s)	278, 303, 357
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	3 cut(s)	219, 237, 243
TaqI	TCGA	1 cut(s)	627
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	6 cut(s)	102, 404, 449, 532, 583, 586
Tru1I	TTAA	2 cut(s)	549, 561
Tru9I	TTAA	2 cut(s)	549, 561
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	441, 512
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	43, 613
TspGWI	ACGGA	2 cut(s)	32, 331
TspRI	CASTG	1 cut(s)	119
Vha464I	CTTAAG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	516, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.