Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016353

Physical Location & Seq

Genomic Coordinates Forward (+)

4362309 .. 4364771

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCATGCTTCAGCTTAACCCAGTCAAAGAACTCCTGCTTGCGGTCCAACTTCATCCGGGCCGGCCTCCGGTCCGCCGTCACGGACCTCAAAGACGGCGGCACCACCATGCACTGCTGGGTCCCCAAATCCCTCAACCCCTCCAAACCCAACCTCCTCCTCCTCCACGGCCTCGGCGTCAACGCAATGTGGCAGTTCGCTGACCTCATCCGCCACGTCACCCCTCACTACAACGTCTACGTCCCCGACCTCGTCTTTTTCGGCGACTCCTCCACCACCCGCCCCGACCGCTCCGAGACTTTCCAGGCCGAGTGCGTCATGCGGGTCATGGAGGCCCACTCCGTCCGGGCCTTCAGCCTCGTGGGCCTCAGCTACGGTGGGTTCGTCGGGTACAGGCTGGCGGCCCAGTACAAGGAGGCGGTCGAGAGGGTGGTGATTTGCTGCGCCGCGGTGTGTATGGAGGAGAAGGACCTGCAGGAAGGAGTGTTTAGGGTTTCGGATTTGGACGAGGCCGCCAGCATTTTGATGCCGCAGACGCCGGACAAGCTCCGGGAGCTTGTCAAGTACACTTTTTTCAGGCCGCCGCCGTTGGGGTTTATGCCGTCGTGCTTGCTCAGAGATTTCATCGAGACAATGTTCACAGATTTTGTTCAAGAGAAGAAAGAGTTGATCCAGGCCATCCCTAAAAACCGAAAACTTTCAGACCTTCCCAAGATTCCTCAGCCAACTCTTATAATCTGGGGAGAGCATGATATTGTATTTCCCTTGGAATATGCCCACAAACTAAAAATGCACTTAGGGGAGAATGCTCAGCTTGCAGTAATCAAGGATGCAGGGCACGCGATAAACGCTGAAAAGTGCAAGGAGTTCAACAAGGTCATCAAGTCGTTCCTAATCAATTTCAAGCGCTCACAAATCGGTCTATCTGCTAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016021 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0031224 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044425 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_4

Protein Analysis

312

Amino Acids

35.21

Weight (kDa)

8.51

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	49 - 286	9.5e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	50 - 158	1.8e-16	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	52 - 291	6.8e-19	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37170
malus_domestica	MD08G1183900.v1.1 MD15G1370400.v1.1
prunus_persica	Prupe.1G518000_v2.0.a1
pyrus_communis	pycom08g15770 pycom15g33210
rosa_chinensis	RchiOBHm_Chr7g0238751
rosa_laevigata	RLG00000000815
rosa_multiflora	Rmu_sc0010914.1_g000009
rosa_roxburghii	Rroxscaffold_3G00221580
rosa_rugosa	Rorug07G0323400
rosa_samantha	Rh7AG477700 Rh7CG495700 Rh7DG462700
rosa_wichuraiana	Rw7G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	449, 842
AclWI	GGATC	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	337
AcyI	GRCGYC	2 cut(s)	177, 536
AfaI	GTAC	3 cut(s)	392, 410, 566
AfeI	AGCGCT	1 cut(s)	908
AfiI	CCNNNNNNNGG	4 cut(s)	42, 69, 412, 590
AgsI	TTSAA	3 cut(s)	653, 871, 904
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	303, 672
AluBI	AGCT	5 cut(s)	15, 372, 547, 556, 814
AluI	AGCT	5 cut(s)	15, 372, 547, 556, 814
Alw26I	GTCTC	2 cut(s)	290, 623
AlwI	GGATC	1 cut(s)	664
Aor51HI	AGCGCT	1 cut(s)	908
ApeKI	GCWGC	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	697
AspLEI	GCGC	2 cut(s)	446, 909
AsuC2I	CCSGG	3 cut(s)	59, 347, 551
AsuHPI	GGTGA	2 cut(s)	211, 445
AvaII	GGWCC	5 cut(s)	45, 72, 85, 121, 469
BaeGI	GKGCMC	1 cut(s)	840
BanI	GGYRCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	359
BbvCI	CCTCAGC	2 cut(s)	368, 720
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	5 cut(s)	62, 112, 184, 571, 586
BciT130I	CCWGG	2 cut(s)	305, 674
BcnI	CCSGG	3 cut(s)	59, 347, 551
BcoDI	GTCTC	2 cut(s)	290, 623
BfmI	CTRYAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	910
BfuAI	ACCTGC	1 cut(s)	480
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	8 cut(s)	101, 403, 443, 448, 514, 531, 582, 585
Bme1390I	CCNGG	5 cut(s)	59, 305, 347, 551, 674
Bme18I	GGWCC	5 cut(s)	45, 72, 85, 121, 469
BmgBI	CACGTC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	103, 122, 123
BmrFI	CCNGG	5 cut(s)	59, 305, 347, 551, 674
BmrI	ACTGGG	2 cut(s)	16, 400
BmsI	GCATC	2 cut(s)	516, 820
BmuI	ACTGGG	2 cut(s)	16, 400
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu10I	CCTNAGC	2 cut(s)	368, 720
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuMI	CCSGG	3 cut(s)	59, 347, 551
BsaHI	GRCGYC	2 cut(s)	177, 536
BsaJI	CCNNGG	4 cut(s)	166, 172, 447, 765
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 69, 412, 590
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	22, 406
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	305, 674
BseDI	CCNNGG	4 cut(s)	166, 172, 447, 765
BseGI	GGATG	4 cut(s)	54, 207, 678, 835
BseLI	CCNNNNNNNGG	4 cut(s)	42, 69, 412, 590
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	4 cut(s)	382, 628, 734, 824
BseNI	ACTGG	2 cut(s)	22, 406
BseRI	GAGGAG	5 cut(s)	146, 149, 152, 259, 476
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	2 cut(s)	449, 842
Bsh1285I	CGRYCG	2 cut(s)	289, 423
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	2 cut(s)	289, 423
BsiSI	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
BslFI	GGGAC	2 cut(s)	107, 227
BslI	CCNNNNNNNGG	4 cut(s)	42, 69, 412, 590
BsmAI	GTCTC	2 cut(s)	290, 623
BsmFI	GGGAC	2 cut(s)	107, 227
BsmI	GAATGC	1 cut(s)	811
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	1 cut(s)	669
Bsp1720I	GCTNAGC	1 cut(s)	810
BspCNI	CTCAG	4 cut(s)	381, 627, 733, 823
BspFNI	CGCG	2 cut(s)	449, 842
BspLI	GGNNCC	3 cut(s)	103, 122, 123
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	22, 406
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	166, 172, 447, 765
BssMI	GATC	1 cut(s)	669
BssNI	GRCGYC	2 cut(s)	177, 536
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	765
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	305, 674
Bst4CI	ACNGT	1 cut(s)	377
BstACI	GRCGYC	2 cut(s)	177, 536
BstC8I	GCNNGC	7 cut(s)	41, 64, 399, 517, 611, 816, 840
BstDEI	CTNAG	5 cut(s)	368, 614, 720, 796, 810
BstDSI	CCRYGG	2 cut(s)	166, 447
BstF5I	GGATG	4 cut(s)	54, 207, 678, 835
BstFNI	CGCG	2 cut(s)	449, 842
BstH2I	RGCGCY	1 cut(s)	910
BstHHI	GCGC	2 cut(s)	446, 909
BstKTI	GATC	1 cut(s)	672
BstMAI	GTCTC	2 cut(s)	290, 623
BstMBI	GATC	1 cut(s)	669
BstMCI	CGRYCG	2 cut(s)	289, 423
BstMWI	GCNNNNNNNGC	8 cut(s)	288, 363, 535, 544, 553, 815, 839, 848
BstNI	CCWGG	2 cut(s)	305, 674
BstSCI	CCNGG	5 cut(s)	57, 303, 345, 549, 672
BstSFI	CTRYAG	1 cut(s)	473
BstSLI	GKGCMC	1 cut(s)	840
BstUI	CGCG	2 cut(s)	449, 842
BstV1I	GCAGC	1 cut(s)	428
BtgI	CCRYGG	2 cut(s)	166, 447
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	54, 207, 678, 835
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	7 cut(s)	41, 64, 399, 517, 611, 816, 840
CfoI	GCGC	2 cut(s)	446, 909
Cfr10I	RCCGGY	1 cut(s)	62
Cfr42I	CCGCGG	1 cut(s)	450
CpoI	CGGWCCG	1 cut(s)	72
CseI	GACGC	3 cut(s)	166, 304, 544
Csp6I	GTAC	3 cut(s)	391, 409, 565
CspI	CGGWCCG	1 cut(s)	72
CviAII	CATG	5 cut(s)	6, 109, 319, 328, 749
CviQI	GTAC	3 cut(s)	391, 409, 565
DdeI	CTNAG	5 cut(s)	368, 614, 720, 796, 810
DpnI	GATC	1 cut(s)	671
DpnII	GATC	1 cut(s)	669
EciI	GGCGGA	2 cut(s)	64, 200
Eco130I	CCWWGG	1 cut(s)	765
Eco47I	GGWCC	5 cut(s)	45, 72, 85, 121, 469
Eco47III	AGCGCT	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	121, 469
EcoRII	CCWGG	2 cut(s)	303, 672
EcoT14I	CCWWGG	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	5 cut(s)	9, 112, 322, 331, 752
FaqI	GGGAC	2 cut(s)	107, 227
FatI	CATG	5 cut(s)	5, 108, 318, 327, 748
FauI	CCCGC	2 cut(s)	287, 315
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
FokI	GGATG	4 cut(s)	41, 194, 665, 842
FseI	GGCCGGCC	1 cut(s)	66
Fsp4HI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
GlaI	GCGC	2 cut(s)	445, 908
GluI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	910
HapII	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
HgaI	GACGC	3 cut(s)	166, 304, 544
HhaI	GCGC	2 cut(s)	446, 909
Hin1I	GRCGYC	2 cut(s)	177, 536
Hin1II	CATG	5 cut(s)	9, 112, 322, 331, 752
Hin6I	GCGC	2 cut(s)	444, 907
HinP1I	GCGC	2 cut(s)	444, 907
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	266, 715
HpaII	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
HphI	GGTGA	2 cut(s)	211, 445
Hpy166II	GTNNAC	4 cut(s)	181, 238, 567, 639
Hpy188I	TCNGA	4 cut(s)	295, 499, 617, 703
Hpy188III	TCNNGA	3 cut(s)	424, 628, 653
Hpy8I	GTNNAC	4 cut(s)	181, 238, 567, 639
Hpy99I	CGWCG	2 cut(s)	389, 607
HpyAV	CCTTC	4 cut(s)	361, 460, 473, 716
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	3 cut(s)	216, 234, 240
HpyCH4V	TGCA	6 cut(s)	112, 475, 793, 818, 833, 861
HpyF10VI	GCNNNNNNNGC	8 cut(s)	288, 363, 535, 544, 553, 815, 839, 848
HpyF3I	CTNAG	5 cut(s)	368, 614, 720, 796, 810
HpySE526I	ACGT	3 cut(s)	216, 234, 240
Hsp92I	GRCGYC	2 cut(s)	177, 536
Hsp92II	CATG	5 cut(s)	9, 112, 322, 331, 752
HspAI	GCGC	2 cut(s)	444, 907
KflI	GGGWCCC	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	669
LmnI	GCTCC	3 cut(s)	296, 552, 553
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	516, 820
MaeII	ACGT	3 cut(s)	216, 234, 240
MaeIII	GTNAC	2 cut(s)	79, 217
MalI	GATC	1 cut(s)	671
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	1 cut(s)	669
MboII	GAAGA	1 cut(s)	670
MhlI	GDGCHC	1 cut(s)	840
MluCI	AATT	1 cut(s)	898
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	697
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	2 cut(s)	107, 524
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	6 cut(s)	58, 63, 70, 346, 539, 550
MspR9I	CCNGG	5 cut(s)	59, 305, 347, 551, 674
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	2 cut(s)	305, 674
MvnI	CGCG	2 cut(s)	449, 842
MwoI	GCNNNNNNNGC	8 cut(s)	288, 363, 535, 544, 553, 815, 839, 848
NaeI	GCCGGC	1 cut(s)	64
NciI	CCSGG	3 cut(s)	59, 347, 551
NdeII	GATC	1 cut(s)	669
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	5 cut(s)	9, 112, 322, 331, 752
NlaIV	GGNNCC	3 cut(s)	103, 122, 123
NmeAIII	GCCGAG	2 cut(s)	153, 334
NmuCI	GTSAC	2 cut(s)	79, 217
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 381
PctI	GAATGC	1 cut(s)	811
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	8 cut(s)	101, 403, 443, 448, 514, 531, 582, 585
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	2 cut(s)	121, 469
PsiI	TTATAA	1 cut(s)	734
Psp5II	RGGWCCY	2 cut(s)	121, 469
Psp6I	CCWGG	2 cut(s)	303, 672
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	303, 672
PspN4I	GGNNCC	3 cut(s)	103, 122, 123
PspPPI	RGGWCCY	2 cut(s)	121, 469
PstI	CTGCAG	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	251
RigI	GGCCGGCC	1 cut(s)	66
RsaI	GTAC	3 cut(s)	392, 410, 566
RsaNI	GTAC	3 cut(s)	391, 409, 565
RseI	CAYNNNNRTG	2 cut(s)	107, 524
Rsr2I	CGGWCCG	1 cut(s)	72
RsrII	CGGWCCG	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	8 cut(s)	100, 402, 442, 447, 513, 530, 581, 584
Sau3AI	GATC	1 cut(s)	669
SbfI	CCTGCAGG	1 cut(s)	477
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	5 cut(s)	59, 305, 347, 551, 674
SdaI	CCTGCAGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	2 cut(s)	516, 820
SfcI	CTRYAG	1 cut(s)	473
Sfr303I	CCGCGG	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	450
SinI	GGWCC	5 cut(s)	45, 72, 85, 121, 469
SmiMI	CAYNNNNRTG	2 cut(s)	107, 524
Sse8387I	CCTGCAGG	1 cut(s)	477
Sse9I	AATT	1 cut(s)	898
StyD4I	CCNGG	5 cut(s)	57, 303, 345, 549, 672
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	3 cut(s)	219, 237, 243
TaqI	TCGA	2 cut(s)	423, 627
TaqII	GACCGA	1 cut(s)	908
TasI	AATT	1 cut(s)	898
TatI	WGTACW	2 cut(s)	408, 564
TauI	GCSGC	7 cut(s)	102, 404, 449, 515, 532, 583, 586
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	79, 217
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	2 cut(s)	79, 217
TspDTI	ATGAA	2 cut(s)	43, 613
TspGWI	ACGGA	2 cut(s)	98, 331
TspRI	CASTG	1 cut(s)	119
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	5 cut(s)	45, 72, 85, 121, 469
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.