Rmu_sc0006192.1_g000002

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006192.1
OG0031361
Physical Location & Seq
Reverse (-)
14320 .. 15060
741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
atgtcttcaccgggtcataatagccccgagtctttccctccctccctcgccaaccagttcaatttcatgtcatgctggaattccctactcttcatttgtttgcttcagaccactcttctccaaatgagcagactcgttttcaaatcaaatccacaccctcctccctgtcttcttcttcttcaaacatgttcaagcatgaaccaactcaagcaaatccatgcccacacactcatcaccggcctagctcgtttcacctacatcaccagcaagctcttagccttctccgccttatcggaacacggtgatttacgccacgcagagactatattcaatcgaattccgtcacccaatgtctttgatttcaattccatgatcatgggtttcttgaaaaaatcacattccgaaaagggtctctctgtttttaccaaaatgagaaggataggcaccgacccaaatgctcgaactttcacagttttggttaaagcttgtgttggggtgcctttgcttgatcagatatatggtcagataatgaagtttggacatgagtgtgatgtttatgttactagctcagttattagtgtgtactgtaaattgagagctaagtgggcttccggatgtcttcaccgggtcataatagccccgagtctttccctccctccctcgccaaccagttcaatttcatgtcatgctggaattccctactcttcatttgtttgcttcagaccactcttctccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

246

Amino Acids

27.35

Weight (kDa)

9.44

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 116 - 164 1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031361)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006192.1_g000002
rosa_samantha Rh4BG102600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 443, 496
AccIII TCCGGA 1 cut(s) 611
AciI CCGC 1 cut(s) 285
AcsI RAATTY 3 cut(s) 79, 336, 693
AcuI CTGAAG 2 cut(s) 89, 703
AfaI GTAC 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 8 cut(s) 61, 142, 182, 192, 331, 364, 388, 675
AluBI AGCT 5 cut(s) 245, 271, 485, 567, 599
AluI AGCT 5 cut(s) 245, 271, 485, 567, 599
Alw26I GTCTC 2 cut(s) 314, 416
Ama87I CYCGRG 2 cut(s) 26, 640
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 1 cut(s) 238
ApoI RAATTY 3 cut(s) 79, 336, 693
AsuC2I CCSGG 2 cut(s) 12, 626
AsuHPI GGTGA 6 cut(s) 226, 244, 253, 314, 336, 614
AvaI CYCGRG 2 cut(s) 26, 640
BanI GGYRCC 2 cut(s) 443, 496
BbsI GAAGAC 2 cut(s) 161, 611
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BclI TGATCA 2 cut(s) 372, 508
BcnI CCSGG 2 cut(s) 12, 626
BcoDI GTCTC 2 cut(s) 314, 416
BfaI CTAG 2 cut(s) 242, 564
Bme1390I CCNGG 2 cut(s) 12, 626
BmeT110I CYCGRG 2 cut(s) 26, 640
BmiI GGNNCC 2 cut(s) 445, 498
BmrFI CCNGG 2 cut(s) 12, 626
BpiI GAAGAC 2 cut(s) 161, 611
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 12, 626
BsaI GGTCTC 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 611
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 55, 669
BseAI TCCGGA 1 cut(s) 611
BseGI GGATG 1 cut(s) 620
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 2 cut(s) 55, 669
BseRI GAGGAG 1 cut(s) 150
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 2 cut(s) 443, 496
BsiHKCI CYCGRG 2 cut(s) 26, 640
BsiSI CCGG 4 cut(s) 11, 237, 612, 625
BsmAI GTCTC 2 cut(s) 314, 416
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 2 cut(s) 26, 640
Bsp13I TCCGGA 1 cut(s) 611
Bsp143I GATC 2 cut(s) 372, 508
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 581
BspEI TCCGGA 1 cut(s) 611
BspLI GGNNCC 2 cut(s) 445, 498
BspT107I GGYRCC 2 cut(s) 443, 496
BspTNI GGTCTC 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 2 cut(s) 55, 669
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 2 cut(s) 372, 508
Bst4CI ACNGT 3 cut(s) 302, 472, 587
Bst6I CTCTTC 4 cut(s) 95, 120, 709, 734
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 3 cut(s) 274, 568, 600
BstF5I GGATG 1 cut(s) 620
BstKTI GATC 2 cut(s) 375, 511
BstMAI GTCTC 2 cut(s) 314, 416
BstMBI GATC 2 cut(s) 372, 508
BstMWI GCNNNNNNNGC 2 cut(s) 284, 605
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 10, 624
BstV2I GAAGAC 2 cut(s) 161, 611
BstXI CCANNNNNNTGG 1 cut(s) 376
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 236
Csp6I GTAC 1 cut(s) 583
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 3 cut(s) 274, 568, 600
DpnI GATC 2 cut(s) 374, 510
DpnII GATC 2 cut(s) 372, 508
Eam1104I CTCTTC 4 cut(s) 95, 120, 709, 734
EarI CTCTTC 4 cut(s) 95, 120, 709, 734
EciI GGCGGA 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 89, 703
Eco88I CYCGRG 2 cut(s) 26, 640
EcoRI GAATTC 3 cut(s) 79, 336, 693
FbaI TGATCA 2 cut(s) 372, 508
FokI GGATG 1 cut(s) 627
FspBI CTAG 2 cut(s) 242, 564
HaeIII GGCC 1 cut(s) 240
HapII CCGG 4 cut(s) 11, 237, 612, 625
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 3 cut(s) 29, 132, 643
HpaII CCGG 4 cut(s) 11, 237, 612, 625
HphI GGTGA 6 cut(s) 226, 244, 253, 314, 336, 614
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 6 cut(s) 108, 295, 403, 513, 525, 722
Hpy188III TCNNGA 2 cut(s) 385, 612
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 2 cut(s) 289, 429
HpyCH4III ACNGT 3 cut(s) 302, 472, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 605
HpyF3I CTNAG 3 cut(s) 274, 568, 600
Kpn2I TCCGGA 1 cut(s) 611
Ksp22I TGATCA 2 cut(s) 372, 508
Kzo9I GATC 2 cut(s) 372, 508
MaeI CTAG 2 cut(s) 242, 564
MaeIII GTNAC 2 cut(s) 342, 559
MalI GATC 2 cut(s) 374, 510
MboI GATC 2 cut(s) 372, 508
MboII GAAGA 9 cut(s) 82, 107, 161, 164, 167, 170, 611, 696, 721
MluCI AATT 7 cut(s) 61, 79, 336, 364, 590, 675, 693
MlyI GAGTC 3 cut(s) 38, 126, 652
MnlI CCTC 8 cut(s) 48, 52, 56, 168, 171, 662, 666, 670
MroI TCCGGA 1 cut(s) 611
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 374, 546
MspI CCGG 4 cut(s) 11, 237, 612, 625
MspR9I CCNGG 2 cut(s) 12, 626
MwoI GCNNNNNNNGC 2 cut(s) 284, 605
NciI CCSGG 2 cut(s) 12, 626
NdeII GATC 2 cut(s) 372, 508
NlaIV GGNNCC 2 cut(s) 445, 498
NmuCI GTSAC 1 cut(s) 342
NspI RCATGY 1 cut(s) 189
PciI ACATGT 1 cut(s) 185
PleI GAGTC 3 cut(s) 37, 126, 651
PpsI GAGTC 3 cut(s) 37, 126, 651
PscI ACATGT 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 445, 498
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 2 cut(s) 374, 546
SaqAI TTAA 1 cut(s) 480
Sau3AI GATC 2 cut(s) 372, 508
SchI GAGTC 3 cut(s) 38, 126, 652
ScrFI CCNGG 2 cut(s) 12, 626
SetI ASST 6 cut(s) 247, 257, 273, 487, 569, 601
SmiMI CAYNNNNRTG 2 cut(s) 374, 546
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 7 cut(s) 61, 79, 336, 364, 590, 675, 693
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 242, 564
StyD4I CCNGG 2 cut(s) 10, 624
TaaI ACNGT 3 cut(s) 302, 472, 587
TaqI TCGA 2 cut(s) 334, 460
TasI AATT 7 cut(s) 61, 79, 336, 364, 590, 675, 693
TatI WGTACW 1 cut(s) 582
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 6 cut(s) 55, 82, 212, 545, 669, 696
TspGWI ACGGA 1 cut(s) 330
XapI RAATTY 3 cut(s) 79, 336, 693
XceI RCATGY 1 cut(s) 189
XspI CTAG 2 cut(s) 242, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.