Rh4BG102600

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0031361
Physical Location & Seq
Reverse (-)
17679990 .. 17680337
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG102600.1

Sequence Viewer

Length: 348 bp
ATGAACCAACTCAAGCAAATCCATGCCCACACACTCATCACCGGCCTAGCTCGTTTCACCTACATCACCAGCAGGCTCTTAGCCTTCTCCGCCTTATCGGAACACGGTGATTTACGCCACGCCGAGACTCTATTCAATCGAATTCCGGCACCCAATGTCTTCGATTTCAATTCCATGATCATGGGTTTCTTGAAAAACTCACACTCTGAAAAGGGTCCCTCTGTTTTTACCAAAATGAGAAGGATTGGCGCTGACCCAAACGCTCGAACTTTCACAGTTTTGGTTAAAGCTTGTGTCGGGGTTTCTTTGCTTGATCAGATATATGGTCAGATAATGAAGTTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

10.0

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 51 - 99 2.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031361)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006192.1_g000002
rosa_samantha Rh4BG102600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 141
AgsI TTSAA 3 cut(s) 136, 169, 193
AluBI AGCT 2 cut(s) 50, 290
AluI AGCT 2 cut(s) 50, 290
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 4 cut(s) 31, 49, 58, 119
AvaII GGWCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 151
BclI TGATCA 2 cut(s) 177, 313
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 3 cut(s) 150, 216, 217
BpiI GAAGAC 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 41
BshFI GGCC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 42, 146
BslFI GGGAC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 177, 313
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 150, 216, 217
BspT107I GGYRCC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 2 cut(s) 177, 313
Bst4CI ACNGT 2 cut(s) 107, 277
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 2 cut(s) 180, 316
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 177, 313
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 215
CviAII CATG 3 cut(s) 23, 175, 181
CviJI RGCY 5 cut(s) 45, 50, 76, 83, 290
CviKI_1 RGCY 5 cut(s) 45, 50, 76, 83, 290
DdeI CTNAG 1 cut(s) 79
DpnI GATC 2 cut(s) 179, 315
DpnII GATC 2 cut(s) 177, 313
EciI GGCGGA 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 141
FaeI CATG 3 cut(s) 26, 178, 184
FaiI YATR 5 cut(s) 24, 176, 182, 322, 324
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 22, 174, 180
FbaI TGATCA 2 cut(s) 177, 313
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 1 cut(s) 45
HapII CCGG 2 cut(s) 42, 146
HhaI GCGC 1 cut(s) 251
Hin1II CATG 3 cut(s) 26, 178, 184
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 1 cut(s) 127
HpaII CCGG 2 cut(s) 42, 146
HphI GGTGA 4 cut(s) 31, 49, 58, 119
Hpy188I TCNGA 4 cut(s) 100, 208, 318, 330
Hpy188III TCNNGA 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 94, 234
HpyCH4III ACNGT 2 cut(s) 107, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 79
Hsp92II CATG 3 cut(s) 26, 178, 184
HspAI GCGC 1 cut(s) 249
KflI GGGWCCC 1 cut(s) 215
Ksp22I TGATCA 2 cut(s) 177, 313
Kzo9I GATC 2 cut(s) 177, 313
LpnPI CCDG 4 cut(s) 55, 58, 82, 159
MaeI CTAG 1 cut(s) 47
MalI GATC 2 cut(s) 179, 315
MboI GATC 2 cut(s) 177, 313
MboII GAAGA 1 cut(s) 151
MluCI AATT 2 cut(s) 141, 169
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 1 cut(s) 229
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 2 cut(s) 42, 146
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 177, 313
NlaIII CATG 3 cut(s) 26, 178, 184
NlaIV GGNNCC 3 cut(s) 150, 216, 217
NmeAIII GCCGAG 1 cut(s) 148
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 150, 216, 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 2 cut(s) 177, 313
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 121
SetI ASST 3 cut(s) 52, 62, 292
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 141, 169
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 107, 277
TaqI TCGA 3 cut(s) 139, 162, 265
TasI AATT 2 cut(s) 141, 169
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 141
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.