Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006233.1

Orthogroup ID

OG0031365

Physical Location & Seq

Genomic Coordinates Forward (+)

109450 .. 110020

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006233.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgccaacttccaatcccccccagctcccaaatctcctgaaagacagtatctcccttcggctcgacgcccgactcgtcgagaaaagccatggcgtctgctttagaggccaaaccggaggtacttgtgagcaattcgagaactgggggtttgggatgaagaaggcgaagattgctgtgattcagttccagatttcgcctcccaaaactgatattaagcagagcattatggtttcggactatacccagatggataggattttgaaggaggagaggaactacattctcagtatgattaagaagctcaagtcgacgggttgtaaggttctgcttatccagaagagtattttgagggacgcagtgactgatatgtggttacattacttggccaaaaccaagattttggtggttaaggactggagcttgaggatgatggcggagccgaccagtttgtttgcactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

153

Amino Acids

17.48

Weight (kDa)

9.62

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031365)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006233.1_g000027
rosa_rugosa	Rorug06G0414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	384
AcyI	GRCGYC	2 cut(s)	66, 93
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	3 cut(s)	25, 301, 420
AluI	AGCT	3 cut(s)	25, 301, 420
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	2 cut(s)	106, 384
BalI	TGGCCA	1 cut(s)	386
BccI	CCATC	2 cut(s)	241, 424
BmiI	GGNNCC	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	436
BpuEI	CTTGAG	2 cut(s)	287, 442
BsaHI	GRCGYC	2 cut(s)	66, 93
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse1I	ACTGG	3 cut(s)	146, 419, 444
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	159, 432
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	3 cut(s)	146, 419, 444
BseRI	GAGGAG	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	21
BshFI	GGCC	2 cut(s)	108, 386
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	108, 386
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	2 cut(s)	108, 386
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	146, 419, 444
BssECI	CCNNGG	1 cut(s)	88
BssNI	GRCGYC	2 cut(s)	66, 93
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	66, 93
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	159, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 170
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	108, 386
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	159, 432
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	362
CseI	GACGC	3 cut(s)	74, 82, 362
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	8 cut(s)	25, 61, 87, 108, 301, 386, 420, 439
CviKI_1	RGCY	8 cut(s)	25, 61, 87, 108, 301, 386, 420, 439
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 227, 240, 290, 368
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	308
FokI	GGATG	2 cut(s)	166, 439
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	108, 386
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	3 cut(s)	74, 82, 362
Hin1I	GRCGYC	2 cut(s)	66, 93
Hin1II	CATG	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	72, 178
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	235, 461
Hpy188III	TCNNGA	5 cut(s)	37, 79, 136, 187, 334
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	3 cut(s)	68, 80, 313
HpyAV	CCTTC	3 cut(s)	65, 154, 256
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 170
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	2 cut(s)	66, 93
Hsp92II	CATG	1 cut(s)	92
LmnI	GCTCC	3 cut(s)	30, 417, 436
LpnPI	CCDG	9 cut(s)	35, 50, 127, 127, 200, 257, 347, 400, 457
MaeIII	GTNAC	2 cut(s)	358, 372
MboII	GAAGA	3 cut(s)	169, 178, 349
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	1 cut(s)	131
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	7 cut(s)	98, 110, 207, 259, 264, 342, 417
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	3 cut(s)	213, 294, 408
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	105, 170
NcoI	CCATGG	1 cut(s)	88
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	307
SaqAI	TTAA	3 cut(s)	213, 294, 408
SchI	GAGTC	1 cut(s)	66
SetI	ASST	5 cut(s)	27, 121, 303, 324, 422
SmlI	CTYRAG	2 cut(s)	302, 421
SmoI	CTYRAG	2 cut(s)	302, 421
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	63, 78, 135, 308
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	213, 294, 408
Tru9I	TTAA	3 cut(s)	213, 294, 408
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.