Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0031365

Physical Location & Seq

Genomic Coordinates Reverse (-)

55476075 .. 55476557

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0414100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGCCGACTGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACTTACTTTGTGAGAAGCAGGGAAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCTCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGACCTCGGGTGGTTTCCTCGCAGGAAGATGGCCGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAACGGTGCTTTCAAGTCCACGTATGTGTTGATACTTTTCGCAATTTTAGATCTTTATAGTCTTTCTGATGCATTTGTTACTCTCTGCTATACACTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

160

Amino Acids

16.66

Weight (kDa)

9.02

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	48 - 140	4e-12	PPIC-type PPIASE domain
Rotamase	PF00639	81 - 139	4.7e-11	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031365)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006233.1_g000027
rosa_rugosa	Rorug06G0414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	53, 128
AciI	CCGC	6 cut(s)	45, 72, 75, 108, 245, 300
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	2 cut(s)	270, 343
AcyI	GRCGYC	2 cut(s)	12, 54
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	347, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AleI	CACNNNNGTG	2 cut(s)	140, 404
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	5 cut(s)	18, 261, 333, 337, 354
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	235, 338
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	53, 128
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	113, 325
BceAI	ACGGC	2 cut(s)	226, 241
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	5 cut(s)	45, 48, 73, 76, 301
BlsI	GCNGC	5 cut(s)	46, 49, 74, 77, 302
BmcAI	AGTACT	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	235, 338
BmiI	GGNNCC	3 cut(s)	55, 130, 237
BmsI	GCATC	1 cut(s)	439
BsaAI	YACGTR	2 cut(s)	138, 402
BsaHI	GRCGYC	2 cut(s)	12, 54
BsaJI	CCNNGG	2 cut(s)	15, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	2 cut(s)	50, 335
Bse1I	ACTGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	15, 307
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BshNI	GGYRCC	2 cut(s)	53, 128
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	5 cut(s)	21, 51, 99, 242, 336
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	180, 430
BspACI	CCGC	6 cut(s)	45, 72, 75, 108, 245, 300
BspANI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BspLI	GGNNCC	3 cut(s)	55, 130, 237
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	53, 128
BsrFI	RCCGGY	2 cut(s)	50, 335
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	50, 335
BssECI	CCNNGG	2 cut(s)	15, 307
BssMI	GATC	2 cut(s)	180, 430
BssNI	GRCGYC	2 cut(s)	12, 54
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	386
BstACI	GRCGYC	2 cut(s)	12, 54
BstBAI	YACGTR	2 cut(s)	138, 402
BstC8I	GCNNGC	3 cut(s)	52, 215, 337
BstDEI	CTNAG	2 cut(s)	81, 255
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	183, 433
BstMBI	GATC	2 cut(s)	180, 430
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
BstV1I	GCAGC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	52, 215, 337
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	50, 335
Cfr13I	GGNCC	2 cut(s)	235, 338
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	271
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	81, 255
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	2 cut(s)	182, 432
DpnII	GATC	2 cut(s)	180, 430
EaeI	YGGCCR	1 cut(s)	333
EciI	GGCGGA	2 cut(s)	123, 260
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	270, 343
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	15
FaiI	YATR	4 cut(s)	141, 405, 438, 471
FaqI	GGGAC	1 cut(s)	221
Fnu4HI	GCNGC	5 cut(s)	45, 48, 73, 76, 301
FriOI	GRGCYC	1 cut(s)	126
FseI	GGCCGGCC	1 cut(s)	339
Fsp4HI	GCNGC	5 cut(s)	45, 48, 73, 76, 301
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	5 cut(s)	45, 48, 73, 76, 301
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	5 cut(s)	20, 263, 335, 339, 356
HapII	CCGG	5 cut(s)	21, 51, 99, 242, 336
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	2 cut(s)	12, 54
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	5 cut(s)	21, 51, 99, 242, 336
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	6 cut(s)	118, 221, 268, 277, 369, 448
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	139, 294, 367
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	137, 401
HpyCH4V	TGCA	3 cut(s)	135, 205, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
HpyF3I	CTNAG	2 cut(s)	81, 255
HpySE526I	ACGT	2 cut(s)	137, 401
Hsp92I	GRCGYC	2 cut(s)	12, 54
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	2 cut(s)	50, 335
KroNI	GCCGGC	2 cut(s)	52, 337
Kzo9I	GATC	2 cut(s)	180, 430
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	439
MaeII	ACGT	2 cut(s)	137, 401
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	182, 432
MboI	GATC	2 cut(s)	180, 430
MboII	GAAGA	2 cut(s)	304, 340
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	423
Mly113I	GGCGCC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	17, 61, 249, 274, 317, 330, 343
Mph1103I	ATGCAT	1 cut(s)	454
MroNI	GCCGGC	2 cut(s)	50, 335
MslI	CAYNNNNRTG	2 cut(s)	140, 404
MspI	CCGG	5 cut(s)	21, 51, 99, 242, 336
MwoI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
NaeI	GCCGGC	2 cut(s)	52, 337
NarI	GGCGCC	1 cut(s)	54
NdeII	GATC	2 cut(s)	180, 430
NgoMIV	GCCGGC	2 cut(s)	50, 335
NlaIV	GGNNCC	3 cut(s)	55, 130, 237
NmeAIII	GCCGAG	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	454
OliI	CACNNNNGTG	2 cut(s)	140, 404
PaqCI	CACCTGC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	2 cut(s)	52, 337
PkrI	GCNGC	5 cut(s)	46, 49, 74, 77, 302
PluTI	GGCGCC	1 cut(s)	57
Ppu21I	YACGTR	2 cut(s)	138, 402
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	55, 130, 237
PspPI	GGNCC	2 cut(s)	235, 338
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	430
RigI	GGCCGGCC	1 cut(s)	339
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	140, 404
SatI	GCNGC	5 cut(s)	45, 48, 73, 76, 301
Sau3AI	GATC	2 cut(s)	180, 430
Sau96I	GGNCC	2 cut(s)	235, 338
ScaI	AGTACT	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	7 cut(s)	115, 134, 140, 237, 309, 354, 404
SfaNI	GCATC	1 cut(s)	439
SfoI	GGCGCC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	140, 404
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	6 cut(s)	45, 72, 75, 108, 245, 300
SspDI	GGCGCC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	140, 404
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	4 cut(s)	47, 75, 78, 303
TscAI	CASTG	1 cut(s)	480
TseI	GCWGC	1 cut(s)	47
TspRI	CASTG	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.