Rmu_sc0006267.1_g000002

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006267.1
OG0025607
Physical Location & Seq
Forward (+)
2438 .. 4066
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006267.1_g000002.1.cds

Sequence Viewer

Length: 1629 bp
atgagaagtgattatagtagtgttggaagatacagtagaacatcccactcttcttctttgtcccttgcatcagcaccatcatcaagatcatcaaagttggtgaatactaaccttgatgatctccctgatgatgtattgatcgagatcctttctcgacttccatgctatgagttcgtgttccaatgcaagtctgtgtgcaagctctggggaaagctaatgacgtcggagctgtacttcattggccgctttgtgcttcaacagcaaaggaaacgtactgaaacgccacggcccctacttccatcgctgactctgatgaaccaaagagaggagacccctgttacattattgccgacttcctcgcccaaactcgtagatcgtagaaacatacagtcatttgtgttgggggtttgcaatgacttggttttctgttgcgaacgtgatcattatgcacgtgattatgctgtctgtaatccgtatactgcacaacgggctactcttaatcgtccccctggaaccgttggccacataccagttggattcatatgtgatcccatttacaagaaaaccagacatgatgtgcatggggaggtaattagtattgatttcaattataggtgcaaggttgtgagagttcgtccttgcgaggggactaaaagagatgagctttcctccaagttaagggtggaaatctgctcttttgataccgataaatggagagagtcgattgtatcactcccacgaagatttacttttaacagaatcgacacaggctcttactttgttcacaatggagtgatatattggtcgagtacttggggaagtagtaactttctgattgggttggacccattcatgatcagtgacactaataacaacatcactactagtactagtactagctacagttactccagtgttgatcatgaatgtcactatacatgtcgtttcattgaattagcagttaaagaccatgctgacaatccgtttcctttataccatgctgatcatcagtataagatacggtgcctcggtgtggccgaaggcagagattgtttgcaaatttgtgttttaaactccactaacaatacacattatgtattggtttgggatttgaaacaagagctgatcacgaatgctgatggagttggaaagttgtgttcgaaagagtacttttcgctggacattcccaaacaagttgaatttttaagttttgacccaactaatgaggatctcttgtacgcaagactcaaacatggagttgatggagtctgtttttcccagatcaactttcgtaatagaaggtcggaattcgaggtagacatggctggaaagagtataattagtaatcattggtccttccgaatatgtgcggaaccattttggcctacaccggttcctagactaccaattataaaggaacagtctatagcagatcaattagcagaaatattaagcatacggcgtagatgggaaattgatgagaagctaaaatctgaagctgcccatgaagcggcgcataatgaagatagcacaaggctccggtcatcaagtaatgatgcttgcagagcacaagcgcttggcaaagatgtggagcaaaatgaaaggactgaagatttcaaaggagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

542

Amino Acids

62.05

Weight (kDa)

6.95

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025607)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006267.1_g000002
rosa_roxburghii Rroxscaffold_4G00279340
rosa_samantha Rh1DG431200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1412
AatII GACGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 1023
AccI GTMKAC 2 cut(s) 476, 1317
AciI CCGC 3 cut(s) 244, 1370, 1511
AclWI GGATC 3 cut(s) 139, 542, 1236
AcoI YGGCCR 3 cut(s) 241, 520, 1035
AcsI RAATTY 3 cut(s) 1059, 1199, 1307
AcuI CTGAAG 2 cut(s) 1515, 1629
AcvI CACGTG 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 7 cut(s) 233, 274, 811, 889, 895, 1169, 1238
AfeI AGCGCT 1 cut(s) 1575
AfiI CCNNNNNNNGG 6 cut(s) 325, 644, 678, 711, 1033, 1510
AflIII ACRYGT 1 cut(s) 938
AgeI ACCGGT 1 cut(s) 1390
AgsI TTSAA 6 cut(s) 257, 607, 953, 1114, 1199, 1618
AhlI ACTAGT 2 cut(s) 884, 890
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 8 cut(s) 202, 214, 229, 664, 900, 1123, 1486, 1499
AluI AGCT 8 cut(s) 202, 214, 229, 664, 900, 1123, 1486, 1499
Alw21I GWGCWC 1 cut(s) 1570
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 3 cut(s) 139, 542, 1236
Aor51HI AGCGCT 1 cut(s) 1575
AoxI GGCC 5 cut(s) 241, 287, 520, 1035, 1382
ApeKI GCWGC 1 cut(s) 1499
ApoI RAATTY 3 cut(s) 1059, 1199, 1307
AsiGI ACCGGT 1 cut(s) 1390
AspLEI GCGC 2 cut(s) 1516, 1576
AspS9I GGNCC 3 cut(s) 288, 844, 1353
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 1160
AvaII GGWCC 2 cut(s) 844, 1353
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 1 cut(s) 1023
BbrPI CACGTG 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 1570
BbvI GCAGC 1 cut(s) 1486
BccI CCATC 5 cut(s) 85, 307, 1133, 1256, 1461
BceAI ACGGC 2 cut(s) 302, 1475
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BciT130I CCWGG 1 cut(s) 510
BclI TGATCA 5 cut(s) 439, 855, 919, 1003, 1125
BcoDI GTCTC 1 cut(s) 323
BcuI ACTAGT 2 cut(s) 884, 890
BfaI CTAG 4 cut(s) 885, 891, 897, 1398
BfmI CTRYAG 2 cut(s) 901, 1425
BfoI RGCGCY 1 cut(s) 1577
BisI GCNGC 3 cut(s) 244, 1500, 1512
BlsI GCNGC 3 cut(s) 245, 1501, 1513
BmcAI AGTACT 4 cut(s) 811, 889, 895, 1169
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 844, 1353
BmgT120I GGNCC 3 cut(s) 288, 844, 1353
BmiI GGNNCC 7 cut(s) 290, 514, 846, 1025, 1374, 1395, 1538
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 77, 1546
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 1 cut(s) 895
Bpu14I TTCGAA 1 cut(s) 1160
BsaAI YACGTR 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 3 cut(s) 284, 508, 1027
BsaWI WCCGGW 2 cut(s) 1390, 1539
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 6 cut(s) 325, 644, 678, 711, 1033, 1510
Bse118I RCCGGY 1 cut(s) 1390
Bse1I ACTGG 2 cut(s) 530, 912
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 3 cut(s) 284, 508, 1027
BseGI GGATG 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 6 cut(s) 325, 644, 678, 711, 1033, 1510
BseMI GCAATG 1 cut(s) 418
BseNI ACTGG 2 cut(s) 530, 912
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 1486
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 5 cut(s) 243, 289, 522, 1037, 1384
BshNI GGYRCC 1 cut(s) 1023
BshTI ACCGGT 1 cut(s) 1390
BsiHKAI GWGCWC 1 cut(s) 1570
BsiSI CCGG 2 cut(s) 1391, 1540
BslFI GGGAC 3 cut(s) 46, 489, 661
BslI CCNNNNNNNGG 6 cut(s) 325, 644, 678, 711, 1033, 1510
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 3 cut(s) 46, 489, 661
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 5 cut(s) 243, 289, 522, 1037, 1384
Bso31I GGTCTC 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 1160
Bsp1286I GDGCHC 1 cut(s) 1570
BspACI CCGC 3 cut(s) 244, 1370, 1511
BspANI GGCC 5 cut(s) 243, 289, 522, 1037, 1384
BspHI TCATGA 2 cut(s) 852, 922
BspLI GGNNCC 7 cut(s) 290, 514, 846, 1025, 1374, 1395, 1538
BspPI GGATC 3 cut(s) 139, 542, 1236
BspT104I TTCGAA 1 cut(s) 1160
BspT107I GGYRCC 1 cut(s) 1023
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 1390
BsrI ACTGG 2 cut(s) 530, 912
BssAI RCCGGY 1 cut(s) 1390
BssECI CCNNGG 3 cut(s) 284, 508, 1027
BssNAI GTATAC 1 cut(s) 477
BssNI GRCGYC 1 cut(s) 221
Bst1107I GTATAC 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 6 cut(s) 35, 390, 517, 905, 1023, 1422
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 452
BstBI TTCGAA 1 cut(s) 1160
BstC8I GCNNGC 2 cut(s) 200, 1561
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 1577
BstHHI GCGC 2 cut(s) 1516, 1576
BstMAI GTCTC 1 cut(s) 323
BstMWI GCNNNNNNNGC 4 cut(s) 259, 488, 1508, 1565
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 2 cut(s) 901, 1425
BstV1I GCAGC 1 cut(s) 1486
BstX2I RGATCY 2 cut(s) 144, 1228
BstYI RGATCY 2 cut(s) 144, 1228
BstZ17I GTATAC 1 cut(s) 477
BsuRI GGCC 5 cut(s) 243, 289, 522, 1037, 1384
BtgI CCRYGG 1 cut(s) 284
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 865, 919
Cac8I GCNNGC 2 cut(s) 200, 1561
CciI TCATGA 2 cut(s) 852, 922
CfoI GCGC 2 cut(s) 1516, 1576
Cfr10I RCCGGY 1 cut(s) 1390
Cfr13I GGNCC 3 cut(s) 288, 844, 1353
Csp6I GTAC 7 cut(s) 232, 273, 810, 888, 894, 1168, 1237
CspAI ACCGGT 1 cut(s) 1390
CviQI GTAC 7 cut(s) 232, 273, 810, 888, 894, 1168, 1237
DraI TTTAAA 1 cut(s) 1071
EaeI YGGCCR 3 cut(s) 241, 520, 1035
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 844, 1353
Eco47III AGCGCT 1 cut(s) 1575
Eco57I CTGAAG 2 cut(s) 1515, 1629
Eco72I CACGTG 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 1307
EcoRII CCWGG 1 cut(s) 508
FalI AAGNNNNNCTT 2 cut(s) 733, 765
FaqI GGGAC 3 cut(s) 46, 489, 661
FauNDI CATATG 1 cut(s) 542
FbaI TGATCA 5 cut(s) 439, 855, 919, 1003, 1125
FblI GTMKAC 2 cut(s) 476, 1317
Fnu4HI GCNGC 3 cut(s) 244, 1500, 1512
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 244, 1500, 1512
FspBI CTAG 4 cut(s) 885, 891, 897, 1398
GlaI GCGC 2 cut(s) 1515, 1575
GluI GCNGC 3 cut(s) 244, 1500, 1512
GsuI CTGGAG 1 cut(s) 895
HaeII RGCGCY 1 cut(s) 1577
HaeIII GGCC 5 cut(s) 243, 289, 522, 1037, 1384
HapII CCGG 2 cut(s) 1391, 1540
HhaI GCGC 2 cut(s) 1516, 1576
Hin1I GRCGYC 1 cut(s) 221
Hin6I GCGC 2 cut(s) 1514, 1574
HinP1I GCGC 2 cut(s) 1514, 1574
HinfI GANTC 6 cut(s) 307, 537, 719, 759, 1245, 1266
HpaII CCGG 2 cut(s) 1391, 1540
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 3 cut(s) 477, 784, 1318
Hpy188I TCNGA 6 cut(s) 226, 312, 834, 1306, 1361, 1495
Hpy188III TCNNGA 6 cut(s) 84, 142, 153, 853, 923, 1129
Hpy8I GTNNAC 3 cut(s) 477, 784, 1318
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 1034, 1293, 1366
HpyCH4III ACNGT 6 cut(s) 35, 390, 517, 905, 1023, 1422
HpyCH4IV ACGT 4 cut(s) 221, 271, 436, 451
HpyF10VI GCNNNNNNNGC 4 cut(s) 259, 488, 1508, 1565
HpySE526I ACGT 4 cut(s) 221, 271, 436, 451
Hsp92I GRCGYC 1 cut(s) 221
HspAI GCGC 2 cut(s) 1514, 1574
Ksp22I TGATCA 5 cut(s) 439, 855, 919, 1003, 1125
LmnI GCTCC 3 cut(s) 226, 1542, 1591
Lsp1109I GCAGC 1 cut(s) 1486
LweI GCATC 2 cut(s) 77, 1546
MaeI CTAG 4 cut(s) 885, 891, 897, 1398
MaeII ACGT 4 cut(s) 221, 271, 436, 451
MaeIII GTNAC 5 cut(s) 337, 824, 860, 905, 929
MboII GAAGA 6 cut(s) 39, 42, 45, 753, 1535, 1622
MflI RGATCY 2 cut(s) 144, 1228
MhlI GDGCHC 1 cut(s) 1570
MlsI TGGCCA 1 cut(s) 522
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 4 cut(s) 301, 728, 1239, 1275
MmeI TCCRAC 6 cut(s) 4, 204, 514, 822, 1126, 1284
MnlI CCTC 9 cut(s) 319, 367, 580, 637, 679, 1037, 1219, 1306, 1616
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 7 cut(s) 498, 677, 753, 963, 1070, 1205, 1451
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 2 cut(s) 1391, 1540
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 4 cut(s) 259, 488, 1508, 1565
NdeI CATATG 1 cut(s) 542
NlaIV GGNNCC 7 cut(s) 290, 514, 846, 1025, 1374, 1395, 1538
NmuCI GTSAC 2 cut(s) 860, 929
NspI RCATGY 1 cut(s) 942
NspV TTCGAA 1 cut(s) 1160
PagI TCATGA 2 cut(s) 852, 922
PciI ACATGT 1 cut(s) 938
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PctI GAATGC 1 cut(s) 1138
PfeI GAWTC 2 cut(s) 537, 759
PinAI ACCGGT 1 cut(s) 1390
PkrI GCNGC 3 cut(s) 245, 1501, 1513
PleI GAGTC 4 cut(s) 301, 727, 1239, 1274
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
PpsI GAGTC 4 cut(s) 301, 727, 1239, 1274
Ppu21I YACGTR 1 cut(s) 452
PscI ACATGT 1 cut(s) 938
PsiI TTATAA 1 cut(s) 1412
Psp6I CCWGG 1 cut(s) 508
PspCI CACGTG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 7 cut(s) 290, 514, 846, 1025, 1374, 1395, 1538
PspPI GGNCC 3 cut(s) 288, 844, 1353
PsuI RGATCY 2 cut(s) 144, 1228
RsaI GTAC 7 cut(s) 233, 274, 811, 889, 895, 1169, 1238
RsaNI GTAC 7 cut(s) 232, 273, 810, 888, 894, 1168, 1237
SaqAI TTAA 7 cut(s) 498, 677, 753, 963, 1070, 1205, 1451
SatI GCNGC 3 cut(s) 244, 1500, 1512
Sau96I GGNCC 3 cut(s) 288, 844, 1353
ScaI AGTACT 4 cut(s) 811, 889, 895, 1169
SchI GAGTC 4 cut(s) 301, 728, 1239, 1275
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 1570
SfaNI GCATC 2 cut(s) 77, 1546
SfcI CTRYAG 2 cut(s) 901, 1425
SfuI TTCGAA 1 cut(s) 1160
SinI GGWCC 2 cut(s) 844, 1353
SpeI ACTAGT 2 cut(s) 884, 890
SsiI CCGC 3 cut(s) 244, 1370, 1511
SspI AATATT 1 cut(s) 1449
SspMI CTAG 4 cut(s) 885, 891, 897, 1398
StyD4I CCNGG 1 cut(s) 508
TaaI ACNGT 6 cut(s) 35, 390, 517, 905, 1023, 1422
TaiI ACGT 4 cut(s) 224, 274, 439, 454
TaqI TCGA 7 cut(s) 141, 154, 722, 762, 806, 1160, 1311
TatI WGTACW 5 cut(s) 231, 809, 887, 893, 1167
TauI GCSGC 2 cut(s) 246, 1514
TfiI GAWTC 2 cut(s) 537, 759
Tru1I TTAA 7 cut(s) 498, 677, 753, 963, 1070, 1205, 1451
Tru9I TTAA 7 cut(s) 498, 677, 753, 963, 1070, 1205, 1451
TscAI CASTG 2 cut(s) 865, 919
TseFI GTSAC 2 cut(s) 860, 929
TseI GCWGC 1 cut(s) 1499
Tsp45I GTSAC 2 cut(s) 860, 929
TspDTI ATGAA 9 cut(s) 226, 329, 529, 841, 937, 939, 1521, 1536, 1614
TspGWI ACGGA 2 cut(s) 462, 972
TspRI CASTG 2 cut(s) 865, 919
VpaK11BI GGWCC 2 cut(s) 844, 1353
XapI RAATTY 3 cut(s) 1059, 1199, 1307
XceI RCATGY 1 cut(s) 942
XcmI CCANNNNNNNNNTGG 2 cut(s) 530, 679
XmiI GTMKAC 2 cut(s) 476, 1317
XspI CTAG 4 cut(s) 885, 891, 897, 1398
ZraI GACGTC 1 cut(s) 222
ZrmI AGTACT 4 cut(s) 811, 889, 895, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.