Rroxscaffold_4G00279340

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0025607
Physical Location & Seq
Reverse (-)
2171326 .. 2172887
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279340.1

Sequence Viewer

Length: 1470 bp
ATGAGAAGTGATTATAGTAGTGTTGGAAGATACAGTAGAACATCCCACTCTTCTTCTTTGTCCCTTGCATCAGCACCATCATCAAGATCATCAAAGTTGGTGAATACTAACCTTGATGATCTCCCTGATGATGTATTGATCGAGATCCTTTCTCGACTTCCATGCTATGAGTTCGTGTTCCAATGCAAGTCTGTGTGCAAGCTCTGGGGAAAGCTAATGACGTCGGAGCTGTACTTCATTGGCCGCTTTGTGCTTCAACAGCAAAGGAAACGTACTGAAACGCCACGGCCCCTACTTCCATCGCTGACTCTGATGAACCAAAGAGAGGAGACCCCTGTTACATTATTGCCGACTTCCTCGCCCAAACTCGTAGATCGTAGAAACATAAAGTCATTTGTGTTGGGGGTTTGCAATGACTTGGTTTTCTGTTGCGAACGTGATCGTTATGCACGTGATTATGCGTCTGTAATCCGTATACTGCACAACGGGCTACTCTTAATCGTCCCCATGGAACCGTCGGCTACGTACCAGTTGGATTCATATGTGATCCCATTTACAAGAAAACCAGACATGATGTGCATGGGGAGGGTGGAAATCTTCTCTTTTGATACCGGTAAATGGAGAGAGTCGATTGTATCACTCCCACGAAGATTTACTTTTAACAGAATCGACACAGGCTCTTACTTTGTTCACAATGGAGTGATATATTGGTCGAGTACTTGGGGAAGTAGTAACTTTCTGATTGGGTTGGACCCATTCATGATCAGTGACACTAATAACAACATCACTACTAGTACTAGTACTAGCTACAGTTACTCCAGTGATGATCATGAACGTCACTATACATGTCGTTTCATTGAATTAGCAGTTAAAGACCATGCTGACAATCCGTTTCCTTTATACCATGCTGATCATCAGTATAAGATACGGTGCCTCGGTGTGGCCGAAGGCAGAGATTGTTTGCACATTTGTGTTTTAAACTCCACTAACAATACACATTATGTATTGGTTTGGGATTTGAAACAAGAGCTGATCACGAATGCTGATGGAGTTGGAAAGTTGTGTTCGAAAGAGTACTTTTGGCTGGACATTCCCAAACAAGTTGAATTTTTAAGTTTTGACCCAACTAATGAGGATCTCTTGTACTCAAGACTCAAACATGGAGTTGATGGAGTCTGTTTTTCCCAGATCAACTTTCGTAATAGAAGGTTGGAATTCGAGGTAGACATGGCTGGAAAGAGTATACTTAGTAATCATTGGTCCTTCCGAATATGTGCGGAACCATTTTGGCCTACACCGGTTCCTAGACTACCAATTATAAAGGAACAGTCTATAGCAGATCAATTAGCAGAAATATTAAGCATACAGCGTAGATGGGAAATTGATGAGAAGCTAAAATCTGAAGCTGCCCATGAAGCGGCGCATAATGAAGATAGCACAAGGCTCCGGTCATCAAGTAATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

489

Amino Acids

56.31

Weight (kDa)

6.54

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 75 9.6e-08 F-box domain
F-box-like PF12937 38 - 75 7.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025607)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006267.1_g000002
rosa_roxburghii Rroxscaffold_4G00279340
rosa_samantha Rh1DG431200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1319
AatII GACGTC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 930
AccI GTMKAC 3 cut(s) 475, 1224, 1243
AciI CCGC 3 cut(s) 244, 1277, 1418
AclWI GGATC 3 cut(s) 139, 541, 1143
AcoI YGGCCR 2 cut(s) 241, 942
AcsI RAATTY 2 cut(s) 1106, 1214
AcuI CTGAAG 1 cut(s) 1422
AcvI CACGTG 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 8 cut(s) 233, 274, 527, 718, 796, 802, 1076, 1145
AfiI CCNNNNNNNGG 4 cut(s) 325, 618, 940, 1417
AflIII ACRYGT 1 cut(s) 845
AgeI ACCGGT 2 cut(s) 611, 1297
AgsI TTSAA 4 cut(s) 257, 860, 1021, 1106
AhlI ACTAGT 2 cut(s) 791, 797
AleI CACNNNNGTG 1 cut(s) 969
AluBI AGCT 7 cut(s) 202, 214, 229, 807, 1030, 1393, 1406
AluI AGCT 7 cut(s) 202, 214, 229, 807, 1030, 1393, 1406
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 3 cut(s) 139, 541, 1143
AoxI GGCC 4 cut(s) 241, 287, 942, 1289
ApeKI GCWGC 1 cut(s) 1406
ApoI RAATTY 2 cut(s) 1106, 1214
AsiGI ACCGGT 2 cut(s) 611, 1297
AspLEI GCGC 1 cut(s) 1423
AspS9I GGNCC 3 cut(s) 288, 751, 1260
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 1067
AvaII GGWCC 2 cut(s) 751, 1260
BanI GGYRCC 1 cut(s) 930
BbrPI CACGTG 1 cut(s) 452
BbvI GCAGC 1 cut(s) 1393
BccI CCATC 5 cut(s) 85, 307, 1040, 1163, 1368
BceAI ACGGC 1 cut(s) 302
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BclI TGATCA 4 cut(s) 762, 826, 910, 1032
BcoDI GTCTC 1 cut(s) 323
BcuI ACTAGT 2 cut(s) 791, 797
BfaI CTAG 4 cut(s) 792, 798, 804, 1305
BfmI CTRYAG 2 cut(s) 808, 1332
BisI GCNGC 3 cut(s) 244, 1407, 1419
BlsI GCNGC 3 cut(s) 245, 1408, 1420
BmcAI AGTACT 4 cut(s) 718, 796, 802, 1076
Bme18I GGWCC 2 cut(s) 751, 1260
BmgT120I GGNCC 3 cut(s) 288, 751, 1260
BmiI GGNNCC 7 cut(s) 290, 513, 753, 932, 1281, 1302, 1445
BmsI GCATC 2 cut(s) 77, 1453
BpmI CTGGAG 1 cut(s) 802
Bpu14I TTCGAA 1 cut(s) 1067
BpuEI CTTGAG 1 cut(s) 1132
BsaAI YACGTR 2 cut(s) 452, 525
BsaBI GATNNNNATC 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 3 cut(s) 284, 507, 934
BsaWI WCCGGW 3 cut(s) 611, 1297, 1446
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bsc4I CCNNNNNNNGG 4 cut(s) 325, 618, 940, 1417
Bse118I RCCGGY 2 cut(s) 611, 1297
Bse1I ACTGG 2 cut(s) 529, 819
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 284, 507, 934
BseGI GGATG 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 4 cut(s) 325, 618, 940, 1417
BseMI GCAATG 1 cut(s) 418
BseNI ACTGG 2 cut(s) 529, 819
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 1393
BsgI GTGCAG 1 cut(s) 464
BshFI GGCC 4 cut(s) 243, 289, 944, 1291
BshNI GGYRCC 1 cut(s) 930
BshTI ACCGGT 2 cut(s) 611, 1297
BsiSI CCGG 3 cut(s) 612, 1298, 1447
BslFI GGGAC 2 cut(s) 46, 488
BslI CCNNNNNNNGG 4 cut(s) 325, 618, 940, 1417
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 46, 488
BsmI GAATGC 1 cut(s) 1045
BsnI GGCC 4 cut(s) 243, 289, 944, 1291
Bso31I GGTCTC 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 1067
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 3 cut(s) 244, 1277, 1418
BspANI GGCC 4 cut(s) 243, 289, 944, 1291
BspHI TCATGA 2 cut(s) 759, 829
BspLI GGNNCC 7 cut(s) 290, 513, 753, 932, 1281, 1302, 1445
BspPI GGATC 3 cut(s) 139, 541, 1143
BspT104I TTCGAA 1 cut(s) 1067
BspT107I GGYRCC 1 cut(s) 930
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 2 cut(s) 611, 1297
BsrI ACTGG 2 cut(s) 529, 819
BssAI RCCGGY 2 cut(s) 611, 1297
BssECI CCNNGG 3 cut(s) 284, 507, 934
BssNAI GTATAC 2 cut(s) 476, 1244
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 507
Bst1107I GTATAC 2 cut(s) 476, 1244
Bst4CI ACNGT 5 cut(s) 35, 516, 812, 930, 1329
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 221
BstBAI YACGTR 2 cut(s) 452, 525
BstBI TTCGAA 1 cut(s) 1067
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 1247
BstDSI CCRYGG 2 cut(s) 284, 507
BstF5I GGATG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 1423
BstMAI GTCTC 1 cut(s) 323
BstMWI GCNNNNNNNGC 3 cut(s) 259, 487, 1415
BstNSI RCATGY 1 cut(s) 849
BstSFI CTRYAG 2 cut(s) 808, 1332
BstSNI TACGTA 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 1393
BstX2I RGATCY 2 cut(s) 144, 1135
BstYI RGATCY 2 cut(s) 144, 1135
BstZ17I GTATAC 2 cut(s) 476, 1244
BsuRI GGCC 4 cut(s) 243, 289, 944, 1291
BtgI CCRYGG 2 cut(s) 284, 507
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 772, 826
Cac8I GCNNGC 1 cut(s) 200
CciI TCATGA 2 cut(s) 759, 829
CfoI GCGC 1 cut(s) 1423
Cfr10I RCCGGY 2 cut(s) 611, 1297
Cfr13I GGNCC 3 cut(s) 288, 751, 1260
CseI GACGC 1 cut(s) 450
Csp6I GTAC 8 cut(s) 232, 273, 526, 717, 795, 801, 1075, 1144
CspAI ACCGGT 2 cut(s) 611, 1297
CviQI GTAC 8 cut(s) 232, 273, 526, 717, 795, 801, 1075, 1144
DdeI CTNAG 1 cut(s) 1247
DraI TTTAAA 1 cut(s) 978
EaeI YGGCCR 2 cut(s) 241, 942
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 751, 1260
Eco57I CTGAAG 1 cut(s) 1422
Eco72I CACGTG 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 1214
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FaqI GGGAC 2 cut(s) 46, 488
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 4 cut(s) 762, 826, 910, 1032
FblI GTMKAC 3 cut(s) 475, 1224, 1243
Fnu4HI GCNGC 3 cut(s) 244, 1407, 1419
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 244, 1407, 1419
FspBI CTAG 4 cut(s) 792, 798, 804, 1305
GlaI GCGC 1 cut(s) 1422
GluI GCNGC 3 cut(s) 244, 1407, 1419
GsuI CTGGAG 1 cut(s) 802
HaeIII GGCC 4 cut(s) 243, 289, 944, 1291
HapII CCGG 3 cut(s) 612, 1298, 1447
HgaI GACGC 1 cut(s) 450
HhaI GCGC 1 cut(s) 1423
Hin1I GRCGYC 1 cut(s) 221
Hin6I GCGC 1 cut(s) 1421
HinP1I GCGC 1 cut(s) 1421
HinfI GANTC 6 cut(s) 307, 536, 626, 666, 1152, 1173
HpaII CCGG 3 cut(s) 612, 1298, 1447
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 4 cut(s) 476, 691, 1225, 1244
Hpy188I TCNGA 5 cut(s) 226, 312, 741, 1268, 1402
Hpy188III TCNNGA 7 cut(s) 84, 142, 153, 760, 830, 1036, 1149
Hpy8I GTNNAC 4 cut(s) 476, 691, 1225, 1244
Hpy99I CGWCG 2 cut(s) 226, 520
HpyAV CCTTC 3 cut(s) 941, 1200, 1273
HpyCH4III ACNGT 5 cut(s) 35, 516, 812, 930, 1329
HpyCH4IV ACGT 6 cut(s) 221, 271, 436, 451, 524, 835
HpyCH4V TGCA 8 cut(s) 68, 186, 198, 411, 449, 481, 579, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 487, 1415
HpyF3I CTNAG 1 cut(s) 1247
HpySE526I ACGT 6 cut(s) 221, 271, 436, 451, 524, 835
Hsp92I GRCGYC 1 cut(s) 221
HspAI GCGC 1 cut(s) 1421
Ksp22I TGATCA 4 cut(s) 762, 826, 910, 1032
LmnI GCTCC 2 cut(s) 226, 1449
Lsp1109I GCAGC 1 cut(s) 1393
LweI GCATC 2 cut(s) 77, 1453
MaeI CTAG 4 cut(s) 792, 798, 804, 1305
MaeII ACGT 6 cut(s) 221, 271, 436, 451, 524, 835
MaeIII GTNAC 5 cut(s) 337, 731, 767, 812, 836
MboII GAAGA 6 cut(s) 39, 42, 45, 589, 660, 1442
MflI RGATCY 2 cut(s) 144, 1135
MluCI AATT 6 cut(s) 860, 1106, 1214, 1314, 1343, 1380
MlyI GAGTC 4 cut(s) 301, 635, 1146, 1182
MmeI TCCRAC 6 cut(s) 4, 204, 513, 729, 1033, 1191
MnlI CCTC 6 cut(s) 319, 367, 579, 944, 1126, 1213
MseI TTAA 6 cut(s) 497, 660, 870, 977, 1112, 1358
MslI CAYNNNNRTG 1 cut(s) 969
MspI CCGG 3 cut(s) 612, 1298, 1447
Mva1269I GAATGC 1 cut(s) 1045
MwoI GCNNNNNNNGC 3 cut(s) 259, 487, 1415
NcoI CCATGG 1 cut(s) 507
NdeI CATATG 1 cut(s) 541
NlaIV GGNNCC 7 cut(s) 290, 513, 753, 932, 1281, 1302, 1445
NmuCI GTSAC 2 cut(s) 767, 836
NspI RCATGY 1 cut(s) 849
NspV TTCGAA 1 cut(s) 1067
OliI CACNNNNGTG 1 cut(s) 969
PagI TCATGA 2 cut(s) 759, 829
PciI ACATGT 1 cut(s) 845
PcsI WCGNNNNNNNCGW 2 cut(s) 448, 942
PctI GAATGC 1 cut(s) 1045
PfeI GAWTC 2 cut(s) 536, 666
PinAI ACCGGT 2 cut(s) 611, 1297
PkrI GCNGC 3 cut(s) 245, 1408, 1420
PleI GAGTC 4 cut(s) 301, 634, 1146, 1181
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
PpsI GAGTC 4 cut(s) 301, 634, 1146, 1181
Ppu21I YACGTR 2 cut(s) 452, 525
PscI ACATGT 1 cut(s) 845
PsiI TTATAA 1 cut(s) 1319
PspCI CACGTG 1 cut(s) 452
PspN4I GGNNCC 7 cut(s) 290, 513, 753, 932, 1281, 1302, 1445
PspPI GGNCC 3 cut(s) 288, 751, 1260
PsuI RGATCY 2 cut(s) 144, 1135
RsaI GTAC 8 cut(s) 233, 274, 527, 718, 796, 802, 1076, 1145
RsaNI GTAC 8 cut(s) 232, 273, 526, 717, 795, 801, 1075, 1144
RseI CAYNNNNRTG 1 cut(s) 969
SaqAI TTAA 6 cut(s) 497, 660, 870, 977, 1112, 1358
SatI GCNGC 3 cut(s) 244, 1407, 1419
Sau96I GGNCC 3 cut(s) 288, 751, 1260
ScaI AGTACT 4 cut(s) 718, 796, 802, 1076
SchI GAGTC 4 cut(s) 301, 635, 1146, 1182
SfaNI GCATC 2 cut(s) 77, 1453
SfcI CTRYAG 2 cut(s) 808, 1332
SfuI TTCGAA 1 cut(s) 1067
SinI GGWCC 2 cut(s) 751, 1260
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 1 cut(s) 1147
SmoI CTYRAG 1 cut(s) 1147
SnaBI TACGTA 1 cut(s) 525
SpeI ACTAGT 2 cut(s) 791, 797
Sse9I AATT 6 cut(s) 860, 1106, 1214, 1314, 1343, 1380
SsiI CCGC 3 cut(s) 244, 1277, 1418
SspI AATATT 1 cut(s) 1356
SspMI CTAG 4 cut(s) 792, 798, 804, 1305
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 5 cut(s) 35, 516, 812, 930, 1329
TaiI ACGT 6 cut(s) 224, 274, 439, 454, 527, 838
TaqI TCGA 7 cut(s) 141, 154, 629, 669, 713, 1067, 1218
TasI AATT 6 cut(s) 860, 1106, 1214, 1314, 1343, 1380
TatI WGTACW 6 cut(s) 231, 716, 794, 800, 1074, 1143
TauI GCSGC 2 cut(s) 246, 1421
TfiI GAWTC 2 cut(s) 536, 666
Tru1I TTAA 6 cut(s) 497, 660, 870, 977, 1112, 1358
Tru9I TTAA 6 cut(s) 497, 660, 870, 977, 1112, 1358
TscAI CASTG 2 cut(s) 772, 826
TseFI GTSAC 2 cut(s) 767, 836
TseI GCWGC 1 cut(s) 1406
Tsp45I GTSAC 2 cut(s) 767, 836
TspDTI ATGAA 8 cut(s) 226, 329, 528, 748, 844, 846, 1428, 1443
TspGWI ACGGA 2 cut(s) 461, 879
TspRI CASTG 2 cut(s) 772, 826
VpaK11BI GGWCC 2 cut(s) 751, 1260
XapI RAATTY 2 cut(s) 1106, 1214
XceI RCATGY 1 cut(s) 849
XmiI GTMKAC 3 cut(s) 475, 1224, 1243
XspI CTAG 4 cut(s) 792, 798, 804, 1305
ZraI GACGTC 1 cut(s) 222
ZrmI AGTACT 4 cut(s) 718, 796, 802, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.