Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006267.1

Orthogroup ID

OG0031152

Physical Location & Seq

Genomic Coordinates Forward (+)

25565 .. 31234

Gene Structure 5670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006267.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgggaggtggtgacagtactagtggttcgaccaaaagaagaagaagaagatacagtagaaaatcccagtcctcatcattgtcactcggagcagtaccaccggcctttgatcatccaccaaaaagatcagcaccaccaccaaaatcaaagtttgtcaatactaatattgatgatctccctgacaatgtattggtcgacatcctttctcaacttccaagctatgaatacgtttatgaatacagcagctttgtgtgcaagcgttggaggtatctcatgtcctacctatactacagtgggcgctatctacttcgacataagcaaccaccgccacttactctgataaacaaaagaggagaaaccttccctattaaattgattccttcatctcccaagtttctatctatgcttttcaaaagactcatgagtgtcatgtctctgacatgcgagccagtcgtggtaggggcgactgcttctttctccaccgctagcgaaatcgtggaggctcaaggccacattgtaagggccaccggccggaaggacagccacagcaaggtttgcaccaccaaacgccccagggatcgcagtatcaggctcgtcgcccacaccgccattcaattctacgacatgcatgaccggcttggatacgaccagcctagcaaggtcgtcgattggccgcgcaggacacgcagaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

231

Amino Acids

26.38

Weight (kDa)

10.22

Isoelectric Point (pI)

81.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031152)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001733.1_g000003 Rmu_sc0006267.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	676
AciI	CCGC	4 cut(s)	326, 483, 606, 674
AclWI	GGATC	1 cut(s)	585
AcoI	YGGCCR	2 cut(s)	529, 671
AfaI	GTAC	2 cut(s)	19, 96
AfiI	CCNNNNNNNGG	2 cut(s)	531, 550
AgsI	TTSAA	2 cut(s)	412, 614
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	2 cut(s)	219, 246
AluI	AGCT	2 cut(s)	219, 246
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	585
AoxI	GGCC	5 cut(s)	102, 508, 522, 529, 671
ApeKI	GCWGC	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	300, 678
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	635
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	438
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	3 cut(s)	21, 486, 654
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	2 cut(s)	244, 674
BlsI	GCNGC	2 cut(s)	245, 675
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	61
BmtI	GCTAGC	1 cut(s)	489
BmuI	ACTGGG	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	572, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	531, 550
Bse118I	RCCGGY	3 cut(s)	100, 527, 633
Bse1I	ACTGG	2 cut(s)	67, 449
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	572, 573
BseGI	GGATG	2 cut(s)	112, 198
BseLI	CCNNNNNNNGG	2 cut(s)	531, 550
BseNI	ACTGG	2 cut(s)	67, 449
BseRI	GAGGAG	1 cut(s)	366
BseX3I	CGGCCG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	676
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	5 cut(s)	104, 510, 524, 531, 673
BsiEI	CGRYCG	1 cut(s)	532
BsiSI	CCGG	4 cut(s)	101, 528, 532, 634
BslI	CCNNNNNNNGG	2 cut(s)	531, 550
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	5 cut(s)	104, 510, 524, 531, 673
Bsp143I	GATC	4 cut(s)	109, 125, 172, 577
BspACI	CCGC	4 cut(s)	326, 483, 606, 674
BspANI	GGCC	5 cut(s)	104, 510, 524, 531, 673
BspFNI	CGCG	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	585
BsrFI	RCCGGY	3 cut(s)	100, 527, 633
BsrI	ACTGG	2 cut(s)	67, 449
BssAI	RCCGGY	3 cut(s)	100, 527, 633
BssECI	CCNNGG	2 cut(s)	572, 573
BssMI	GATC	4 cut(s)	109, 125, 172, 577
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	3 cut(s)	17, 56, 293
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	257, 446, 487
BstF5I	GGATG	2 cut(s)	112, 198
BstFNI	CGCG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	300, 678
BstKTI	GATC	4 cut(s)	112, 128, 175, 580
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	4 cut(s)	109, 125, 172, 577
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	6 cut(s)	252, 325, 555, 605, 634, 684
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	2 cut(s)	444, 628
BstSCI	CCNGG	1 cut(s)	572
BstSFI	CTRYAG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	676
BstV1I	GCAGC	1 cut(s)	255
BstZI	CGGCCG	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	5 cut(s)	104, 510, 524, 531, 673
BtsCI	GGATG	2 cut(s)	112, 198
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	257, 446, 487
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	2 cut(s)	300, 678
Cfr10I	RCCGGY	3 cut(s)	100, 527, 633
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	2 cut(s)	18, 95
CviAII	CATG	6 cut(s)	274, 421, 430, 441, 625, 629
CviQI	GTAC	2 cut(s)	18, 95
DpnI	GATC	4 cut(s)	111, 127, 174, 579
DpnII	GATC	4 cut(s)	109, 125, 172, 577
EaeI	YGGCCR	2 cut(s)	529, 671
EagI	CGGCCG	1 cut(s)	529
EclXI	CGGCCG	1 cut(s)	529
Eco52I	CGGCCG	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	630
FaeI	CATG	6 cut(s)	277, 424, 433, 444, 628, 632
FatI	CATG	6 cut(s)	273, 420, 429, 440, 624, 628
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	244, 674
FokI	GGATG	2 cut(s)	99, 185
Fsp4HI	GCNGC	2 cut(s)	244, 674
FspBI	CTAG	3 cut(s)	21, 486, 654
GlaI	GCGC	2 cut(s)	299, 677
GluI	GCNGC	2 cut(s)	244, 674
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	5 cut(s)	104, 510, 524, 531, 673
HapII	CCGG	4 cut(s)	101, 528, 532, 634
HhaI	GCGC	2 cut(s)	300, 678
Hin1II	CATG	6 cut(s)	277, 424, 433, 444, 628, 632
Hin6I	GCGC	2 cut(s)	298, 676
HinP1I	GCGC	2 cut(s)	298, 676
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	376, 417
HpaII	CCGG	4 cut(s)	101, 528, 532, 634
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	89, 339, 438
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	599, 668
HpyAV	CCTTC	3 cut(s)	370, 390, 529
HpyCH4III	ACNGT	3 cut(s)	17, 56, 293
HpyCH4IV	ACGT	2 cut(s)	228, 692
HpyCH4V	TGCA	3 cut(s)	255, 558, 628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	252, 325, 555, 605, 634, 684
HpySE526I	ACGT	2 cut(s)	228, 692
Hsp92II	CATG	6 cut(s)	277, 424, 433, 444, 628, 632
HspAI	GCGC	2 cut(s)	298, 676
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 125, 172, 577
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	1 cut(s)	255
MaeI	CTAG	3 cut(s)	21, 486, 654
MaeII	ACGT	2 cut(s)	228, 692
MaeIII	GTNAC	2 cut(s)	11, 81
MalI	GATC	4 cut(s)	111, 127, 174, 579
MboI	GATC	4 cut(s)	109, 125, 172, 577
MboII	GAAGA	4 cut(s)	51, 54, 57, 60
MluCI	AATT	2 cut(s)	371, 614
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	82, 258, 344, 493
Mph1103I	ATGCAT	1 cut(s)	630
MseI	TTAA	1 cut(s)	369
MspI	CCGG	4 cut(s)	101, 528, 532, 634
MspR9I	CCNGG	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	1 cut(s)	676
MwoI	GCNNNNNNNGC	6 cut(s)	252, 325, 555, 605, 634, 684
NdeII	GATC	4 cut(s)	109, 125, 172, 577
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	6 cut(s)	277, 424, 433, 444, 628, 632
NmuCI	GTSAC	2 cut(s)	11, 81
NsiI	ATGCAT	1 cut(s)	630
NspI	RCATGY	2 cut(s)	444, 628
PagI	TCATGA	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	245, 675
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	522
PsrI	GAACNNNNNNTAC	2 cut(s)	10, 42
RsaI	GTAC	2 cut(s)	19, 96
RsaNI	GTAC	2 cut(s)	18, 95
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	244, 674
Sau3AI	GATC	4 cut(s)	109, 125, 172, 577
Sau96I	GGNCC	1 cut(s)	522
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	2 cut(s)	371, 614
SsiI	CCGC	4 cut(s)	326, 483, 606, 674
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	3 cut(s)	21, 486, 654
StyD4I	CCNGG	1 cut(s)	572
TaaI	ACNGT	3 cut(s)	17, 56, 293
TaiI	ACGT	2 cut(s)	231, 695
TaqI	TCGA	4 cut(s)	29, 195, 310, 666
TasI	AATT	2 cut(s)	371, 614
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	11, 81
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	2 cut(s)	11, 81
TspDTI	ATGAA	3 cut(s)	237, 249, 372
TspRI	CASTG	1 cut(s)	298
XceI	RCATGY	2 cut(s)	444, 628
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	3 cut(s)	21, 486, 654
ZrmI	AGTACT	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.