Rmu_sc0006315.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006315.1
OG0025608
Physical Location & Seq
Reverse (-)
78394 .. 79570
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006315.1_g000017.1.cds

Sequence Viewer

Length: 489 bp
atggtgtcaccccatttgtttcctccactgaaaagcctcatttcctcatttgtttattatccaagcaccccatctgtctctctgtggagagcaagaatggtgtcaacaattctctcacccacatcctcatttccctccaattccaacccttactctgatgcctcttccacctctaccagctttaacaaatccagactaccctttgaaccttccagaagaacccttcaacttcctaaatccctaaagctacttcctttcatggcctctgttggcccaattgaggatggctcagctgagcagtttttgcagaacaattctattggggacttcatgaggttcaagactggcgttgatggaggctcagctgttgttagctgcaagaagaagttcccttcgtctcttctgaagccttttcttcaggttgatttggtttcgacgattcacgtagcggataaagagtacttttcaaccctccaaaaggagctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.86

Weight (kDa)

9.59

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025608)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006315.1_g000017
rosa_samantha Rh1AG410800 Rh1AG411400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 449
AcuI CTGAAG 2 cut(s) 401, 425
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 280, 478
AgsI TTSAA 4 cut(s) 206, 227, 340, 468
AluBI AGCT 6 cut(s) 180, 247, 293, 365, 375, 484
AluI AGCT 6 cut(s) 180, 247, 293, 365, 375, 484
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 82, 402
AoxI GGCC 2 cut(s) 261, 271
ApeKI GCWGC 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 108
BanII GRGCYC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 79, 278, 347
BcoDI GTCTC 2 cut(s) 82, 402
BfaI CTAG 1 cut(s) 487
BisI GCNGC 1 cut(s) 376
BlpI GCTNAGC 3 cut(s) 289, 294, 361
BlsI GCNGC 1 cut(s) 377
BmcAI AGTACT 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu1102I GCTNAGC 3 cut(s) 289, 294, 361
BsaAI YACGTR 1 cut(s) 445
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 478
Bse1I ACTGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 122, 289
BseLI CCNNNNNNNGG 2 cut(s) 280, 478
BseMII CTCAG 3 cut(s) 285, 303, 375
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 362
BshFI GGCC 2 cut(s) 263, 273
BsiHKAI GWGCWC 1 cut(s) 486
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 280, 478
BsmAI GTCTC 2 cut(s) 82, 402
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 2 cut(s) 263, 273
Bsp1286I GDGCHC 1 cut(s) 486
Bsp1720I GCTNAGC 3 cut(s) 289, 294, 361
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 263, 273
BspCNI CTCAG 3 cut(s) 286, 302, 374
BspHI TCATGA 1 cut(s) 330
BsrI ACTGG 1 cut(s) 349
Bst6I CTCTTC 2 cut(s) 169, 405
BstAPI GCANNNNNTGC 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 445
BstDEI CTNAG 3 cut(s) 289, 294, 361
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 2 cut(s) 122, 289
BstMAI GTCTC 2 cut(s) 82, 402
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 263, 273
BtsCI GGATG 2 cut(s) 122, 289
BtsIMutI CAGTG 1 cut(s) 26
CciI TCATGA 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 460
CviAII CATG 2 cut(s) 259, 331
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 3 cut(s) 289, 294, 361
Eam1104I CTCTTC 2 cut(s) 169, 405
EarI CTCTTC 2 cut(s) 169, 405
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 486
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 401, 425
EcoICRI GAGCTC 1 cut(s) 484
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 2 cut(s) 262, 334
FaiI YATR 2 cut(s) 260, 332
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 258, 330
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 2 cut(s) 109, 296
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 487
GluI GCNGC 1 cut(s) 376
HaeIII GGCC 2 cut(s) 263, 273
Hin1II CATG 2 cut(s) 262, 334
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 439
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 157, 405
Hpy188III TCNNGA 4 cut(s) 192, 213, 331, 340
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 3 cut(s) 219, 233, 402
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 307, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 3 cut(s) 289, 294, 361
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 2 cut(s) 262, 334
LmnI GCTCC 1 cut(s) 481
LpnPI CCDG 5 cut(s) 190, 205, 226, 330, 404
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 487
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 5 cut(s) 156, 228, 392, 394, 407
MfeI CAATTG 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 4 cut(s) 108, 139, 276, 313
MmeI TCCRAC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 293, 365
MunI CAATTG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 262, 334
NmuCI GTSAC 1 cut(s) 6
PagI TCATGA 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 1 cut(s) 377
Ppu21I YACGTR 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 272
PvuII CAGCTG 2 cut(s) 293, 365
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 376
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 461
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 4 cut(s) 108, 139, 276, 313
SsiI CCGC 1 cut(s) 449
SspMI CTAG 1 cut(s) 487
SstI GAGCTC 1 cut(s) 486
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 434
TasI AATT 4 cut(s) 108, 139, 276, 313
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 247, 319
TspRI CASTG 1 cut(s) 33
XagI CCTNNNNNAGG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 1 cut(s) 487
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.