Rh1AG411400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0025608
Physical Location & Seq
Forward (+)
64465497 .. 64466415
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG411400.1

Sequence Viewer

Length: 231 bp
ATGGCCTCTGTTGGCCCAATTGAGGATGGCTCAGCTGAGCAGTTTTTGCAGAACAATTCTATTGGGGACTTCATGAGGTTCAAGACTGGCGTTGATGGAGGCTCAGCTGTTGTTAGCTGCAAGAAGAAGTTCCCTTCGTCTCTTCTGAAGCCTTTTCTTCAGGTTGATTTGGTTTCGACGATTCACGTAGCGGATAAAGAGTACTTTTCAACCCTCCAAAAGGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.28

Weight (kDa)

5.65

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025608)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006315.1_g000017
rosa_samantha Rh1AG410800 Rh1AG411400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcuI CTGAAG 2 cut(s) 143, 167
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 22, 220
AgsI TTSAA 2 cut(s) 82, 210
AluBI AGCT 4 cut(s) 35, 107, 117, 226
AluI AGCT 4 cut(s) 35, 107, 117, 226
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 2 cut(s) 3, 13
ApeKI GCWGC 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 104
BccI CCATC 2 cut(s) 20, 89
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 118
BlpI GCTNAGC 3 cut(s) 31, 36, 103
BlsI GCNGC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 14, 46
Bpu1102I GCTNAGC 3 cut(s) 31, 36, 103
BsaAI YACGTR 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 220
Bse1I ACTGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 22, 220
BseMII CTCAG 3 cut(s) 27, 45, 117
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 2 cut(s) 5, 15
BsiHKAI GWGCWC 1 cut(s) 228
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 22, 220
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 5, 15
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1720I GCTNAGC 3 cut(s) 31, 36, 103
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 5, 15
BspCNI CTCAG 3 cut(s) 28, 44, 116
BspHI TCATGA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 31, 36, 103
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 5, 15
BtsCI GGATG 1 cut(s) 31
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 73
CviJI RGCY 9 cut(s) 5, 15, 30, 35, 102, 107, 117, 151, 226
CviKI_1 RGCY 9 cut(s) 5, 15, 30, 35, 102, 107, 117, 151, 226
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 31, 36, 103
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 143, 167
EcoICRI GAGCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 229
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 2 cut(s) 5, 15
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 73, 82
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 49, 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 3 cut(s) 31, 36, 103
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 76
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 2 cut(s) 72, 146
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 1 cut(s) 229
MaeII ACGT 1 cut(s) 186
MboII GAAGA 3 cut(s) 134, 136, 149
MfeI CAATTG 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 18, 55
MnlI CCTC 5 cut(s) 16, 16, 69, 92, 224
MroXI GAANNNNTTC 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 35, 107
MunI CAATTG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 76
PagI TCATGA 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 14
PvuII CAGCTG 2 cut(s) 35, 107
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 228
SatI GCNGC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 14
ScaI AGTACT 1 cut(s) 203
SduI GDGCHC 1 cut(s) 228
SetI ASST 7 cut(s) 37, 80, 109, 119, 165, 189, 228
SgeI CNNG 6 cut(s) 85, 94, 99, 133, 173, 197
Sse9I AATT 2 cut(s) 18, 55
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 229
SstI GAGCTC 1 cut(s) 228
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 18, 55
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 181
TseI GCWGC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.