Rmu_sc0006323.1_g000016

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006323.1
OG0020722
Physical Location & Seq
Reverse (-)
73717 .. 74010
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006323.1_g000016.1.cds

Sequence Viewer

Length: 294 bp
atgtctctttcttcttttcagctggaatcggactgtttggctttgatttctactcttttaaatcctctgttggcggttgattggactgcttcgcaccttgtgttaaggattcgagctcgaggttctctcttcaaccgtgtaaactggctttcgaccagtagaaaagctaatgctgctgcagactatgcagcttctatggcttcgcacagggtgtacccggaagattggtcttccaatccccctctctccctaatgcgcattctcctttttgatgctgtaggtccttccccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

97

Amino Acids

10.67

Weight (kDa)

7.98

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020722)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000362.1_g000016 Rmu_sc0006323.1_g000016
rosa_rugosa Rorug05G0547100
rosa_samantha Rh2BG003600 Rh2BG003700 Rh2BG003800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 257
AciI CCGC 1 cut(s) 74
AdeI CACNNNGTG 2 cut(s) 100, 211
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 4 cut(s) 22, 116, 167, 191
AluI AGCT 4 cut(s) 22, 116, 167, 191
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 1 cut(s) 117
ApeKI GCWGC 3 cut(s) 173, 176, 188
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 160, 163, 200
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 177, 276
BisI GCNGC 3 cut(s) 174, 177, 189
BlsI GCNGC 3 cut(s) 175, 178, 190
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpuMI CCSGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 149, 156
BseNI ACTGG 2 cut(s) 149, 156
BseXI GCAGC 3 cut(s) 160, 163, 200
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 118
BspACI CCGC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 181
BsrI ACTGG 2 cut(s) 149, 156
Bst4CI ACNGT 2 cut(s) 35, 137
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 185
BstHHI GCGC 1 cut(s) 258
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 173, 185, 197
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 2 cut(s) 177, 276
BstV1I GCAGC 3 cut(s) 160, 163, 200
BstV2I GAAGAC 1 cut(s) 222
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 7 cut(s) 22, 41, 116, 148, 167, 191, 200
CviKI_1 RGCY 7 cut(s) 22, 41, 116, 148, 167, 191, 200
CviQI GTAC 1 cut(s) 214
DraI TTTAAA 1 cut(s) 60
DraIII CACNNNGTG 2 cut(s) 100, 211
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 118
FaiI YATR 2 cut(s) 186, 197
Fnu4HI GCNGC 3 cut(s) 174, 177, 189
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 174, 177, 189
FspAI RTGCGCAY 1 cut(s) 257
FspI TGCGCA 1 cut(s) 257
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 174, 177, 189
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 258
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 2 cut(s) 26, 109
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 142, 214
Hpy188I TCNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 142, 214
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 2 cut(s) 35, 137
HpyCH4V TGCA 2 cut(s) 179, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 185, 197
HspAI GCGC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 8, 130, 169, 193, 231
Lsp1109I GCAGC 3 cut(s) 160, 163, 200
LweI GCATC 1 cut(s) 262
MboII GAAGA 4 cut(s) 3, 121, 222, 233
MhlI GDGCHC 1 cut(s) 118
MnlI CCTC 3 cut(s) 75, 113, 252
MseI TTAA 2 cut(s) 59, 104
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 173, 185, 197
NciI CCSGG 1 cut(s) 218
NsbI TGCGCA 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 117
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 26, 109
PkrI GCNGC 3 cut(s) 175, 178, 190
PpuMI RGGWCCY 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 281
PspPI GGNCC 1 cut(s) 281
PspPPI RGGWCCY 1 cut(s) 281
PspXI VCTCGAGB 1 cut(s) 117
PstI CTGCAG 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 59, 104
SatI GCNGC 3 cut(s) 174, 177, 189
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 118
SetI ASST 7 cut(s) 24, 99, 118, 124, 169, 193, 283
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 177, 276
Sfr274I CTCGAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SsiI CCGC 1 cut(s) 74
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 35, 137
TaqI TCGA 3 cut(s) 112, 118, 152
TfiI GAWTC 2 cut(s) 26, 109
Tru1I TTAA 2 cut(s) 59, 104
Tru9I TTAA 2 cut(s) 59, 104
TseI GCWGC 3 cut(s) 173, 176, 188
VpaK11BI GGWCC 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.