Rh2BG003800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020722
Physical Location & Seq
Forward (+)
339047 .. 339406
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG003800.1

Sequence Viewer

Length: 360 bp
ATGGGCCACCACTCGATCGTCTCCATCCTCTTCTTCTCCTCCACTGAAACCATCACCAACACCTCTCTTAGCTATCAATGTTTTTCCTCCACCAACTCGATTCCTTTCCAACCATGTGAATACATTAATCTTTGGAAAGAACTACCGGAGCTACGAGACCACGATGGCGAAGCGGTGACTCTGCACGCCGGCGTTGTAGATTTCCGACAGGCTTCCGGAGGGTTGGTCTGGTTCTTAGCGTTGACTGCTGCTCTGCTCTTCTTCCCCCATTGTGGTTGTCTCACTGGTTCTGGAGAGAACCCATTAACCGGCTGCGAGGTGGGTGCGAATATTCCTGCCAATTTGATTGAAATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.9

Weight (kDa)

4.74

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020722)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000362.1_g000016 Rmu_sc0006323.1_g000016
rosa_rugosa Rorug05G0547100
rosa_samantha Rh2BG003600 Rh2BG003700 Rh2BG003800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 272, 308
AgsI TTSAA 1 cut(s) 350
AluBI AGCT 2 cut(s) 72, 151
AluI AGCT 2 cut(s) 72, 151
Alw26I GTCTC 3 cut(s) 25, 150, 284
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 2 cut(s) 248, 312
ApoI RAATTY 1 cut(s) 351
AseI ATTAAT 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 46, 187
BbvI GCAGC 2 cut(s) 235, 299
BccI CCATC 3 cut(s) 32, 59, 158
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcoDI GTCTC 3 cut(s) 25, 150, 284
BisI GCNGC 2 cut(s) 249, 313
BlsI GCNGC 2 cut(s) 250, 314
BmgT120I GGNCC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 150
BsaWI WCCGGW 2 cut(s) 145, 215
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 308
Bse118I RCCGGY 2 cut(s) 188, 308
Bse1I ACTGG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 215
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 272, 308
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 235, 299
BsgI GTGCAG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 6
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 4 cut(s) 146, 189, 216, 309
BslI CCNNNNNNNGG 2 cut(s) 272, 308
BsmAI GTCTC 3 cut(s) 25, 150, 284
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 150
BsrFI RCCGGY 2 cut(s) 188, 308
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 188, 308
BssMI GATC 1 cut(s) 15
Bst6I CTCTTC 2 cut(s) 35, 263
BstC8I GCNNGC 2 cut(s) 186, 190
BstDEI CTNAG 2 cut(s) 68, 235
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 3 cut(s) 25, 150, 284
BstMBI GATC 1 cut(s) 15
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 235, 299
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 42, 282
Cac8I GCNNGC 2 cut(s) 186, 190
Cfr10I RCCGGY 2 cut(s) 188, 308
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 114
CviJI RGCY 5 cut(s) 6, 72, 151, 212, 312
CviKI_1 RGCY 5 cut(s) 6, 72, 151, 212, 312
DdeI CTNAG 2 cut(s) 68, 235
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 35, 263
EarI CTCTTC 2 cut(s) 35, 263
Eco31I GGTCTC 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 1 cut(s) 117
FaiI YATR 1 cut(s) 115
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 249, 313
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 249, 313
GluI GCNGC 2 cut(s) 249, 313
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 6
HapII CCGG 4 cut(s) 146, 189, 216, 309
Hin1II CATG 1 cut(s) 117
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 2 cut(s) 100, 178
HpaII CCGG 4 cut(s) 146, 189, 216, 309
HphI GGTGA 2 cut(s) 46, 187
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 216, 291
Hpy8I GTNNAC 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 68, 235
Hsp92II CATG 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 215
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 9 cut(s) 159, 194, 202, 214, 229, 270, 276, 322, 348
Lsp1109I GCAGC 2 cut(s) 235, 299
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 4 cut(s) 22, 25, 250, 253
MluCI AATT 2 cut(s) 340, 351
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 133, 229
MnlI CCTC 6 cut(s) 38, 49, 73, 97, 212, 310
MreI CGCCGGCG 1 cut(s) 188
MroI TCCGGA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 2 cut(s) 126, 305
MspI CCGG 4 cut(s) 146, 189, 216, 309
MwoI GCNNNNNNNGC 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 1 cut(s) 15
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 250, 314
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 126
PspPI GGNCC 1 cut(s) 4
PvuI CGATCG 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 126, 305
SatI GCNGC 2 cut(s) 249, 313
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 172
SetI ASST 4 cut(s) 65, 74, 153, 321
SgrAI CRCCGGYG 1 cut(s) 188
Sse9I AATT 2 cut(s) 340, 351
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 331
TaqI TCGA 2 cut(s) 14, 98
TasI AATT 2 cut(s) 340, 351
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 2 cut(s) 126, 305
Tru9I TTAA 2 cut(s) 126, 305
TscAI CASTG 2 cut(s) 49, 289
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 248, 312
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 2 cut(s) 49, 289
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.