Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006390.1

Orthogroup ID

OG0027703

Physical Location & Seq

Genomic Coordinates Reverse (-)

644 .. 3285

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006390.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgctgctcttctttatccaggtgaactatttgaaggaatttggccttagtactgaggatgttggcaaattactagcatttaggccccagctaatgggttgtggaatagaggaaagatggaagcccctagttaagtatttgtattaccttggaattaccagagatggtatgaggaggatgcttaccattaaaccgattcttttctgtgctgatttggagaagaccattgtgccaaaggtaaagttttttcaggacataggcattcgagatgatgccataggaaaaatgcttgtaaagtttcctccgttgcttacatacagtctatacaagaaaattcggccagtggtcatattcttgattaccaaagctggagttagtgacggggatattggaaaggttatagctttggcaccagagctgttgggatgcaacattgtgcataagcttgaggttaacgtaaaatattttcgatcacttggcatacaccttagaacattaggtgagatgatagctgatttccccatgctgctccgatacaatacagatctcctccgtccaaaatacagttacctgaggagaactatggtccgccctttgcgagatctcattgagtttccaaggtttttcagctactctcttgagggtcgaattattcctaggcacaaaattctgctagagaatcgcatcaatttaaagctacgatacatgctcgctagcacagatgcagagtttgacaaaagggtcaaaaatatagtagaaaggcgtcaaagatttgaatctggaatcaccaatgaggacttctctaattcccaactcagtgccgtgaatagaattatgcttgatgacactgaaactgaggcagaatcaactatgtttgatgacattgaaattgaggcagaatcaacagtgtttgatgacactgaaagtgagacagaatcagccttgtttaacgacactgaaagtgaagcagaatcaactatgttccatgacactgaaagtgaggcagaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

337

Amino Acids

39.07

Weight (kDa)

5.52

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08810
rosa_multiflora	Rmu_sc0006390.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	94
AciI	CCGC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	338
AcsI	RAATTY	3 cut(s)	38, 333, 666
AcyI	GRCGYC	1 cut(s)	763
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	34, 776, 887
AjnI	CCWGG	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	8 cut(s)	91, 368, 404, 418, 445, 512, 630, 697
AluI	AGCT	8 cut(s)	91, 368, 404, 418, 445, 512, 630, 697
Alw26I	GTCTC	1 cut(s)	923
AoxI	GGCC	3 cut(s)	43, 83, 338
ApeKI	GCWGC	2 cut(s)	4, 526
ApoI	RAATTY	3 cut(s)	38, 333, 666
AspA2I	CCTAGG	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	84, 586
AsuHPI	GGTGA	3 cut(s)	34, 512, 778
AsuNHI	GCTAGC	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	586
AvrII	CCTAGG	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	2 cut(s)	111, 158
BceAI	ACGGC	1 cut(s)	806
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	923
BfaI	CTAG	5 cut(s)	74, 128, 657, 674, 714
BglII	AGATCT	2 cut(s)	544, 601
BisI	GCNGC	2 cut(s)	5, 527
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	2 cut(s)	6, 528
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	84, 586
BmiI	GGNNCC	2 cut(s)	86, 411
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	5 cut(s)	168, 262, 416, 693, 712
BmtI	GCTAGC	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	785, 817
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	467, 659
BsaBI	GATNNNNATC	1 cut(s)	775
BsaHI	GRCGYC	1 cut(s)	763
BsaJI	CCNNGG	3 cut(s)	148, 617, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	148, 617, 656
BseGI	GGATG	3 cut(s)	64, 183, 431
BseJI	GATNNNNATC	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	4 cut(s)	45, 563, 829, 846
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	3 cut(s)	187, 539, 589
BseXI	GCAGC	1 cut(s)	513
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	3 cut(s)	45, 85, 340
BshNI	GGYRCC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	45, 85, 340
Bsp143I	GATC	3 cut(s)	470, 544, 601
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	3 cut(s)	45, 85, 340
BspCNI	CTCAG	4 cut(s)	46, 564, 828, 847
BspLI	GGNNCC	2 cut(s)	86, 411
BspOI	GCTAGC	1 cut(s)	717
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	148, 617, 656
BssMI	GATC	3 cut(s)	470, 544, 601
BssNI	GRCGYC	1 cut(s)	763
BssT1I	CCWWGG	3 cut(s)	148, 617, 656
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	320, 566, 907
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	711, 715
BstDEI	CTNAG	6 cut(s)	47, 54, 488, 572, 815, 855
BstF5I	GGATG	3 cut(s)	64, 183, 431
BstKTI	GATC	3 cut(s)	473, 547, 604
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	3 cut(s)	470, 544, 601
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	513
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	2 cut(s)	544, 601
BstYI	RGATCY	2 cut(s)	544, 601
Bsu36I	CCTNAGG	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	45, 85, 340
BtsCI	GGATG	3 cut(s)	64, 183, 431
BtsIMutI	CAGTG	7 cut(s)	348, 823, 846, 912, 918, 954, 990
Cac8I	GCNNGC	2 cut(s)	711, 715
Cfr13I	GGNCC	2 cut(s)	84, 586
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	523, 706, 986
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	6 cut(s)	47, 54, 488, 572, 815, 855
DpnI	GATC	3 cut(s)	472, 546, 603
DpnII	GATC	3 cut(s)	470, 544, 601
DraI	TTTAAA	1 cut(s)	693
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	578
Eco130I	CCWWGG	3 cut(s)	148, 617, 656
Eco47I	GGWCC	1 cut(s)	586
Eco81I	CCTNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	3 cut(s)	148, 617, 656
ErhI	CCWWGG	3 cut(s)	148, 617, 656
FaeI	CATG	3 cut(s)	526, 709, 989
FatI	CATG	3 cut(s)	522, 705, 985
Fnu4HI	GCNGC	2 cut(s)	5, 527
FokI	GGATG	3 cut(s)	71, 190, 438
Fsp4HI	GCNGC	2 cut(s)	5, 527
FspBI	CTAG	5 cut(s)	74, 128, 657, 674, 714
GluI	GCNGC	2 cut(s)	5, 527
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	45, 85, 340
HgaI	GACGC	1 cut(s)	752
Hin1I	GRCGYC	1 cut(s)	763
Hin1II	CATG	3 cut(s)	526, 709, 989
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	9 cut(s)	196, 679, 776, 783, 863, 899, 935, 971, 1007
HpaI	GTTAAC	1 cut(s)	454
HphI	GGTGA	3 cut(s)	34, 512, 778
Hpy166II	GTNNAC	2 cut(s)	25, 454
Hpy188I	TCNGA	1 cut(s)	533
Hpy188III	TCNNGA	5 cut(s)	251, 266, 355, 638, 780
Hpy8I	GTNNAC	2 cut(s)	25, 454
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	320, 566, 907
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	3 cut(s)	429, 439, 725
HpyF3I	CTNAG	6 cut(s)	47, 54, 488, 572, 815, 855
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	763
Hsp92II	CATG	3 cut(s)	526, 709, 989
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	470, 544, 601
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	534
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	5 cut(s)	168, 262, 416, 693, 712
MaeI	CTAG	5 cut(s)	74, 128, 657, 674, 714
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	377, 566
MalI	GATC	3 cut(s)	472, 546, 603
MboI	GATC	3 cut(s)	470, 544, 601
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	2 cut(s)	544, 601
MseI	TTAA	5 cut(s)	132, 189, 453, 692, 948
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	470, 544, 601
NheI	GCTAGC	1 cut(s)	713
NlaIII	CATG	3 cut(s)	526, 709, 989
NlaIV	GGNNCC	2 cut(s)	86, 411
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	9 cut(s)	196, 679, 776, 783, 863, 899, 935, 971, 1007
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	6, 528
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	86, 411
PspPI	GGNCC	2 cut(s)	84, 586
PsuI	RGATCY	2 cut(s)	544, 601
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	132, 189, 453, 692, 948
SatI	GCNGC	2 cut(s)	5, 527
Sau3AI	GATC	3 cut(s)	470, 544, 601
Sau96I	GGNCC	2 cut(s)	84, 586
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	20
SfaNI	GCATC	5 cut(s)	168, 262, 416, 693, 712
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	2 cut(s)	446, 638
SmoI	CTYRAG	2 cut(s)	446, 638
SsiI	CCGC	1 cut(s)	589
SspI	AATATT	1 cut(s)	464
SspMI	CTAG	5 cut(s)	74, 128, 657, 674, 714
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	3 cut(s)	148, 617, 656
TaaI	ACNGT	3 cut(s)	320, 566, 907
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	3 cut(s)	265, 469, 646
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	9 cut(s)	196, 679, 776, 783, 863, 899, 935, 971, 1007
Tru1I	TTAA	5 cut(s)	132, 189, 453, 692, 948
Tru9I	TTAA	5 cut(s)	132, 189, 453, 692, 948
TscAI	CASTG	7 cut(s)	348, 823, 853, 912, 925, 961, 997
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	4, 526
Tsp45I	GTSAC	1 cut(s)	377
TspGWI	ACGGA	2 cut(s)	294, 542
TspRI	CASTG	7 cut(s)	348, 823, 853, 912, 925, 961, 997
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	3 cut(s)	38, 333, 666
XceI	RCATGY	1 cut(s)	709
XmaJI	CCTAGG	1 cut(s)	656
XspI	CTAG	5 cut(s)	74, 128, 657, 674, 714
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.