mTERF
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21710 AT2G21710 AT2G21710 |
| fragaria_vesca | FvH4_2g08810 FvH4_2g08810 FvH4_2g08810 FvH4_2g08810 |
| malus_domestica | MD05G1066000.v1.1 |
| prunus_persica | Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1 |
| pyrus_communis | pycom05g05740 pycom07g09330 |
| rosa_chinensis | RchiOBHm_Chr6g0264281 |
| rosa_laevigata | RLG00000014272 |
| rosa_multiflora | Rmu_co8378781.1_g000001 Rmu_sc0010483.1_g000016 |
| rosa_roxburghii | Rroxscaffold_176G00431680 |
| rosa_rugosa | Rorug06G0011600 Rorug06G0011600 |
| rosa_samantha | Rh6AG131200 Rh6BG128200 Rh6CG126600 Rh6DG113700 |
| rosa_wichuraiana | Rw6G011460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1084 |
| AccBSI | CCGCTC | 4 cut(s) | 164, 328, 772, 899 |
| AccI | GTMKAC | 1 cut(s) | 1995 |
| AccII | CGCG | 4 cut(s) | 336, 509, 558, 1755 |
| AccIII | TCCGGA | 2 cut(s) | 238, 862 |
| AclWI | GGATC | 2 cut(s) | 1180, 1739 |
| AcoI | YGGCCR | 3 cut(s) | 474, 510, 1328 |
| AcsI | RAATTY | 3 cut(s) | 434, 1028, 1323 |
| AfaI | GTAC | 5 cut(s) | 280, 975, 1042, 1694, 1708 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 238, 600, 638, 639, 862, 1084 |
| AflIII | ACRYGT | 1 cut(s) | 1835 |
| AgsI | TTSAA | 7 cut(s) | 409, 610, 703, 1024, 1766, 1908, 1954 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 673 |
| AhlI | ACTAGT | 1 cut(s) | 1703 |
| AjiI | CACGTC | 1 cut(s) | 95 |
| AjnI | CCWGG | 2 cut(s) | 968, 1239 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 389, 419, 421, 451, 1772, 1804 |
| Alw21I | GWGCWC | 4 cut(s) | 261, 354, 1410, 1431 |
| Alw26I | GTCTC | 3 cut(s) | 185, 461, 660 |
| Alw44I | GTGCAC | 1 cut(s) | 1427 |
| AlwI | GGATC | 2 cut(s) | 1180, 1739 |
| Ama87I | CYCGRG | 1 cut(s) | 1149 |
| Aor13HI | TCCGGA | 2 cut(s) | 238, 862 |
| AoxI | GGCC | 6 cut(s) | 474, 510, 1033, 1073, 1328, 1400 |
| ApaLI | GTGCAC | 1 cut(s) | 1427 |
| ApeKI | GCWGC | 1 cut(s) | 1516 |
| ApoI | RAATTY | 3 cut(s) | 434, 1028, 1323 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1703, 1735 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 762 |
| AspA2I | CCTAGG | 1 cut(s) | 1646 |
| AspLEI | GCGC | 3 cut(s) | 560, 742, 1755 |
| AspS9I | GGNCC | 5 cut(s) | 127, 423, 1074, 1400, 1576 |
| AsuC2I | CCSGG | 2 cut(s) | 125, 294 |
| AsuHPI | GGTGA | 7 cut(s) | 32, 385, 436, 757, 1024, 1502, 1768 |
| AvaI | CYCGRG | 1 cut(s) | 1149 |
| AvaII | GGWCC | 3 cut(s) | 127, 423, 1576 |
| AvrII | CCTAGG | 1 cut(s) | 1646 |
| AxyI | CCTNAGG | 1 cut(s) | 1562 |
| BaeGI | GKGCMC | 2 cut(s) | 594, 1431 |
| BanII | GRGCYC | 3 cut(s) | 261, 373, 1410 |
| BauI | CACGAG | 1 cut(s) | 900 |
| BbsI | GAAGAC | 4 cut(s) | 3, 61, 1217, 1838 |
| Bbv12I | GWGCWC | 4 cut(s) | 261, 354, 1410, 1431 |
| BbvI | GCAGC | 1 cut(s) | 1503 |
| BccI | CCATC | 5 cut(s) | 308, 832, 1078, 1101, 1148 |
| BciT130I | CCWGG | 2 cut(s) | 970, 1241 |
| BcnI | CCSGG | 2 cut(s) | 125, 294 |
| BcoDI | GTCTC | 3 cut(s) | 185, 461, 660 |
| BcuI | ACTAGT | 1 cut(s) | 1703 |
| BfaI | CTAG | 6 cut(s) | 201, 992, 1118, 1647, 1664, 1704 |
| BglII | AGATCT | 1 cut(s) | 1591 |
| BisI | GCNGC | 6 cut(s) | 52, 226, 326, 507, 510, 1517 |
| BlnI | CCTAGG | 1 cut(s) | 1646 |
| BlsI | GCNGC | 6 cut(s) | 53, 227, 327, 508, 511, 1518 |
| BmcAI | AGTACT | 1 cut(s) | 1042 |
| Bme1390I | CCNGG | 4 cut(s) | 125, 294, 970, 1241 |
| Bme18I | GGWCC | 3 cut(s) | 127, 423, 1576 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 673 |
| BmeT110I | CYCGRG | 1 cut(s) | 1149 |
| BmgBI | CACGTC | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 5 cut(s) | 127, 423, 1074, 1400, 1576 |
| BmiI | GGNNCC | 2 cut(s) | 298, 1076 |
| BmrFI | CCNGG | 4 cut(s) | 125, 294, 970, 1241 |
| BmrI | ACTGGG | 1 cut(s) | 280 |
| BmsI | GCATC | 5 cut(s) | 1158, 1252, 1406, 1683, 1782 |
| BmuI | ACTGGG | 1 cut(s) | 280 |
| BpiI | GAAGAC | 4 cut(s) | 3, 61, 1217, 1838 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1775, 1807 |
| BpmI | CTGGAG | 3 cut(s) | 395, 788, 1380 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1478 |
| BpuEI | CTTGAG | 2 cut(s) | 1457, 1649 |
| BpuMI | CCSGG | 2 cut(s) | 125, 294 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1765 |
| BsaI | GGTCTC | 2 cut(s) | 461, 660 |
| BsaWI | WCCGGW | 3 cut(s) | 238, 354, 862 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 167, 197, 857, 887 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 238, 600, 638, 639, 862, 1084 |
| Bse1I | ACTGG | 2 cut(s) | 286, 1331 |
| Bse21I | CCTNAGG | 1 cut(s) | 1562 |
| Bse3DI | GCAATG | 1 cut(s) | 784 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1765 |
| BseAI | TCCGGA | 2 cut(s) | 238, 862 |
| BseBI | CCWGG | 2 cut(s) | 970, 1241 |
| BseJI | GATNNNNATC | 1 cut(s) | 1765 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 238, 600, 638, 639, 862, 1084 |
| BseMI | GCAATG | 1 cut(s) | 784 |
| BseMII | CTCAG | 5 cut(s) | 38, 1035, 1553, 1819, 1851 |
| BseNI | ACTGG | 2 cut(s) | 286, 1331 |
| BseRI | GAGGAG | 8 cut(s) | 64, 158, 161, 257, 304, 320, 1177, 1579 |
| BseSI | GKGCMC | 2 cut(s) | 594, 1431 |
| BseXI | GCAGC | 1 cut(s) | 1503 |
| BseYI | CCCAGC | 1 cut(s) | 1077 |
| Bsh1236I | CGCG | 4 cut(s) | 336, 509, 558, 1755 |
| BshFI | GGCC | 6 cut(s) | 476, 512, 1035, 1075, 1330, 1402 |
| BsiHKAI | GWGCWC | 4 cut(s) | 261, 354, 1410, 1431 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1149 |
| BsiSI | CCGG | 8 cut(s) | 125, 239, 294, 306, 355, 385, 527, 863 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 238, 600, 638, 639, 862, 1084 |
| BsmAI | GTCTC | 3 cut(s) | 185, 461, 660 |
| BsmBI | CGTCTC | 1 cut(s) | 185 |
| BsmI | GAATGC | 1 cut(s) | 1251 |
| BsnI | GGCC | 6 cut(s) | 476, 512, 1035, 1075, 1330, 1402 |
| Bso31I | GGTCTC | 2 cut(s) | 461, 660 |
| BsoBI | CYCGRG | 1 cut(s) | 1149 |
| Bsp1286I | GDGCHC | 6 cut(s) | 261, 354, 373, 594, 1410, 1431 |
| Bsp13I | TCCGGA | 2 cut(s) | 238, 862 |
| Bsp143I | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| BspANI | GGCC | 6 cut(s) | 476, 512, 1035, 1075, 1330, 1402 |
| BspCNI | CTCAG | 5 cut(s) | 37, 1036, 1554, 1818, 1852 |
| BspEI | TCCGGA | 2 cut(s) | 238, 862 |
| BspFNI | CGCG | 4 cut(s) | 336, 509, 558, 1755 |
| BspLI | GGNNCC | 2 cut(s) | 298, 1076 |
| BspPI | GGATC | 2 cut(s) | 1180, 1739 |
| BspTNI | GGTCTC | 2 cut(s) | 461, 660 |
| BsrBI | CCGCTC | 4 cut(s) | 164, 328, 772, 899 |
| BsrDI | GCAATG | 1 cut(s) | 784 |
| BsrI | ACTGG | 2 cut(s) | 286, 1331 |
| BssMI | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| BssSI | CACGAG | 1 cut(s) | 900 |
| BssT1I | CCWWGG | 6 cut(s) | 396, 471, 670, 1138, 1607, 1646 |
| Bst2BI | CACGAG | 1 cut(s) | 900 |
| Bst2UI | CCWGG | 2 cut(s) | 970, 1241 |
| Bst4CI | ACNGT | 9 cut(s) | 67, 179, 568, 847, 881, 1310, 1556, 1912, 1948 |
| BstC8I | GCNNGC | 4 cut(s) | 143, 369, 524, 690 |
| BstDEI | CTNAG | 7 cut(s) | 24, 1037, 1044, 1478, 1562, 1805, 1860 |
| BstDSI | CCRYGG | 1 cut(s) | 507 |
| BstEII | GGTNACC | 1 cut(s) | 391 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 598 |
| BstFNI | CGCG | 4 cut(s) | 336, 509, 558, 1755 |
| BstHHI | GCGC | 3 cut(s) | 560, 742, 1755 |
| BstKTI | GATC | 4 cut(s) | 1188, 1463, 1594, 1734 |
| BstMAI | GTCTC | 3 cut(s) | 185, 461, 660 |
| BstMBI | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1696 |
| BstNI | CCWGG | 2 cut(s) | 970, 1241 |
| BstNSI | RCATGY | 3 cut(s) | 658, 1699, 1839 |
| BstPI | GGTNACC | 1 cut(s) | 391 |
| BstSCI | CCNGG | 4 cut(s) | 123, 292, 968, 1239 |
| BstSLI | GKGCMC | 2 cut(s) | 594, 1431 |
| BstUI | CGCG | 4 cut(s) | 336, 509, 558, 1755 |
| BstV1I | GCAGC | 1 cut(s) | 1503 |
| BstV2I | GAAGAC | 4 cut(s) | 3, 61, 1217, 1838 |
| BstX2I | RGATCY | 1 cut(s) | 1591 |
| BstYI | RGATCY | 1 cut(s) | 1591 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1562 |
| BsuRI | GGCC | 6 cut(s) | 476, 512, 1035, 1075, 1330, 1402 |
| BtgI | CCRYGG | 1 cut(s) | 507 |
| BtrI | CACGTC | 1 cut(s) | 95 |
| BtsIMutI | CAGTG | 4 cut(s) | 1338, 1813, 1851, 1959 |
| Cac8I | GCNNGC | 4 cut(s) | 143, 369, 524, 690 |
| CfoI | GCGC | 3 cut(s) | 560, 742, 1755 |
| Cfr13I | GGNCC | 5 cut(s) | 127, 423, 1074, 1400, 1576 |
| Cfr42I | CCGCGG | 1 cut(s) | 510 |
| CseI | GACGC | 2 cut(s) | 1721, 1895 |
| Csp6I | GTAC | 5 cut(s) | 279, 974, 1041, 1693, 1707 |
| CviAII | CATG | 8 cut(s) | 496, 514, 655, 713, 1513, 1696, 1828, 1836 |
| CviQI | GTAC | 5 cut(s) | 279, 974, 1041, 1693, 1707 |
| DdeI | CTNAG | 7 cut(s) | 24, 1037, 1044, 1478, 1562, 1805, 1860 |
| DpnI | GATC | 4 cut(s) | 1187, 1462, 1593, 1733 |
| DpnII | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| DraI | TTTAAA | 1 cut(s) | 1683 |
| DriI | GACNNNNNGTC | 1 cut(s) | 673 |
| EaeI | YGGCCR | 3 cut(s) | 474, 510, 1328 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 673 |
| EciI | GGCGGA | 2 cut(s) | 1532, 1568 |
| Ecl136II | GAGCTC | 2 cut(s) | 259, 1408 |
| Eco130I | CCWWGG | 6 cut(s) | 396, 471, 670, 1138, 1607, 1646 |
| Eco24I | GRGCYC | 3 cut(s) | 261, 373, 1410 |
| Eco31I | GGTCTC | 2 cut(s) | 461, 660 |
| Eco47I | GGWCC | 3 cut(s) | 127, 423, 1576 |
| Eco53kI | GAGCTC | 2 cut(s) | 259, 1408 |
| Eco81I | CCTNAGG | 1 cut(s) | 1562 |
| Eco88I | CYCGRG | 1 cut(s) | 1149 |
| Eco91I | GGTNACC | 1 cut(s) | 391 |
| EcoICRI | GAGCTC | 2 cut(s) | 259, 1408 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 598 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1074 |
| EcoO65I | GGTNACC | 1 cut(s) | 391 |
| EcoRII | CCWGG | 2 cut(s) | 968, 1239 |
| EcoT14I | CCWWGG | 6 cut(s) | 396, 471, 670, 1138, 1607, 1646 |
| EcoT38I | GRGCYC | 3 cut(s) | 261, 373, 1410 |
| ErhI | CCWWGG | 6 cut(s) | 396, 471, 670, 1138, 1607, 1646 |
| Esp3I | CGTCTC | 1 cut(s) | 185 |
| FaeI | CATG | 8 cut(s) | 499, 517, 658, 716, 1516, 1699, 1831, 1839 |
| FatI | CATG | 8 cut(s) | 495, 513, 654, 712, 1512, 1695, 1827, 1835 |
| FauI | CCCGC | 2 cut(s) | 194, 360 |
| FblI | GTMKAC | 1 cut(s) | 1995 |
| Fnu4HI | GCNGC | 6 cut(s) | 52, 226, 326, 507, 510, 1517 |
| FriOI | GRGCYC | 3 cut(s) | 261, 373, 1410 |
| Fsp4HI | GCNGC | 6 cut(s) | 52, 226, 326, 507, 510, 1517 |
| FspBI | CTAG | 6 cut(s) | 201, 992, 1118, 1647, 1664, 1704 |
| GlaI | GCGC | 3 cut(s) | 559, 741, 1754 |
| GluI | GCNGC | 6 cut(s) | 52, 226, 326, 507, 510, 1517 |
| GsaI | CCCAGC | 1 cut(s) | 1081 |
| GsuI | CTGGAG | 3 cut(s) | 395, 788, 1380 |
| HaeIII | GGCC | 6 cut(s) | 476, 512, 1035, 1075, 1330, 1402 |
| HapII | CCGG | 8 cut(s) | 125, 239, 294, 306, 355, 385, 527, 863 |
| HgaI | GACGC | 2 cut(s) | 1721, 1895 |
| HhaI | GCGC | 3 cut(s) | 560, 742, 1755 |
| Hin1II | CATG | 8 cut(s) | 499, 517, 658, 716, 1516, 1699, 1831, 1839 |
| Hin6I | GCGC | 3 cut(s) | 558, 740, 1753 |
| HinP1I | GCGC | 3 cut(s) | 558, 740, 1753 |
| HincII | GTYRAC | 1 cut(s) | 1444 |
| HindII | GTYRAC | 1 cut(s) | 1444 |
| HindIII | AAGCTT | 1 cut(s) | 1433 |
| HpaI | GTTAAC | 1 cut(s) | 1444 |
| HpaII | CCGG | 8 cut(s) | 125, 239, 294, 306, 355, 385, 527, 863 |
| HphI | GGTGA | 7 cut(s) | 32, 385, 436, 757, 1024, 1502, 1768 |
| Hpy166II | GTNNAC | 5 cut(s) | 159, 1015, 1429, 1444, 1996 |
| Hpy188I | TCNGA | 3 cut(s) | 440, 583, 1523 |
| Hpy188III | TCNNGA | 9 cut(s) | 113, 239, 374, 767, 863, 992, 1256, 1628, 1735 |
| Hpy8I | GTNNAC | 5 cut(s) | 159, 1015, 1429, 1444, 1996 |
| Hpy99I | CGWCG | 5 cut(s) | 119, 341, 344, 347, 350 |
| HpyAV | CCTTC | 7 cut(s) | 262, 330, 382, 678, 712, 717, 1018 |
| HpyCH4III | ACNGT | 9 cut(s) | 67, 179, 568, 847, 881, 1310, 1556, 1912, 1948 |
| HpyCH4IV | ACGT | 4 cut(s) | 94, 277, 492, 1446 |
| HpyCH4V | TGCA | 3 cut(s) | 654, 1419, 1429 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1696 |
| HpyF3I | CTNAG | 7 cut(s) | 24, 1037, 1044, 1478, 1562, 1805, 1860 |
| HpySE526I | ACGT | 4 cut(s) | 94, 277, 492, 1446 |
| Hsp92II | CATG | 8 cut(s) | 499, 517, 658, 716, 1516, 1699, 1831, 1839 |
| HspAI | GCGC | 3 cut(s) | 558, 740, 1753 |
| Kpn2I | TCCGGA | 2 cut(s) | 238, 862 |
| KspAI | GTTAAC | 1 cut(s) | 1444 |
| KspI | CCGCGG | 1 cut(s) | 510 |
| Kzo9I | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| LmnI | GCTCC | 6 cut(s) | 302, 333, 769, 774, 865, 1524 |
| Lsp1109I | GCAGC | 1 cut(s) | 1503 |
| LweI | GCATC | 5 cut(s) | 1158, 1252, 1406, 1683, 1782 |
| MaeI | CTAG | 6 cut(s) | 201, 992, 1118, 1647, 1664, 1704 |
| MaeII | ACGT | 4 cut(s) | 94, 277, 492, 1446 |
| MaeIII | GTNAC | 4 cut(s) | 391, 892, 1367, 1556 |
| MalI | GATC | 4 cut(s) | 1187, 1462, 1593, 1733 |
| MbiI | CCGCTC | 4 cut(s) | 164, 328, 772, 899 |
| MboI | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| MboII | GAAGA | 4 cut(s) | 3, 61, 1222, 1843 |
| MflI | RGATCY | 1 cut(s) | 1591 |
| MhlI | GDGCHC | 6 cut(s) | 261, 354, 373, 594, 1410, 1431 |
| MlyI | GAGTC | 2 cut(s) | 305, 1829 |
| MmeI | TCCRAC | 2 cut(s) | 241, 561 |
| MroI | TCCGGA | 2 cut(s) | 238, 862 |
| MroXI | GAANNNNTTC | 1 cut(s) | 762 |
| MseI | TTAA | 7 cut(s) | 549, 1122, 1179, 1346, 1443, 1682, 1917 |
| MslI | CAYNNNNRTG | 1 cut(s) | 653 |
| MspA1I | CMGCKG | 2 cut(s) | 509, 1081 |
| MspI | CCGG | 8 cut(s) | 125, 239, 294, 306, 355, 385, 527, 863 |
| MspR9I | CCNGG | 4 cut(s) | 125, 294, 970, 1241 |
| Mva1269I | GAATGC | 1 cut(s) | 1251 |
| MvaI | CCWGG | 2 cut(s) | 970, 1241 |
| MvnI | CGCG | 4 cut(s) | 336, 509, 558, 1755 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1696 |
| NciI | CCSGG | 2 cut(s) | 125, 294 |
| NdeII | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| NlaIII | CATG | 8 cut(s) | 499, 517, 658, 716, 1516, 1699, 1831, 1839 |
| NlaIV | GGNNCC | 2 cut(s) | 298, 1076 |
| NmeAIII | GCCGAG | 1 cut(s) | 718 |
| NmuCI | GTSAC | 3 cut(s) | 391, 892, 1367 |
| NspI | RCATGY | 3 cut(s) | 658, 1699, 1839 |
| PasI | CCCWGGG | 1 cut(s) | 969 |
| PciI | ACATGT | 1 cut(s) | 1835 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 345, 498, 579 |
| PctI | GAATGC | 1 cut(s) | 1251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 762 |
| PflFI | GACNNNGTC | 1 cut(s) | 491 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1084 |
| PfoI | TCCNGGA | 1 cut(s) | 1239 |
| PkrI | GCNGC | 6 cut(s) | 53, 227, 327, 508, 511, 1518 |
| PleI | GAGTC | 2 cut(s) | 305, 1828 |
| PpsI | GAGTC | 2 cut(s) | 305, 1828 |
| PscI | ACATGT | 1 cut(s) | 1835 |
| Psp124BI | GAGCTC | 2 cut(s) | 261, 1410 |
| Psp6I | CCWGG | 2 cut(s) | 968, 1239 |
| PspEI | GGTNACC | 1 cut(s) | 391 |
| PspFI | CCCAGC | 1 cut(s) | 1077 |
| PspGI | CCWGG | 2 cut(s) | 968, 1239 |
| PspN4I | GGNNCC | 2 cut(s) | 298, 1076 |
| PspPI | GGNCC | 5 cut(s) | 127, 423, 1074, 1400, 1576 |
| PsuI | RGATCY | 1 cut(s) | 1591 |
| PsyI | GACNNNGTC | 1 cut(s) | 491 |
| PvuII | CAGCTG | 1 cut(s) | 1081 |
| RsaI | GTAC | 5 cut(s) | 280, 975, 1042, 1694, 1708 |
| RsaNI | GTAC | 5 cut(s) | 279, 974, 1041, 1693, 1707 |
| RseI | CAYNNNNRTG | 1 cut(s) | 653 |
| SacI | GAGCTC | 2 cut(s) | 261, 1410 |
| SacII | CCGCGG | 1 cut(s) | 510 |
| SaqAI | TTAA | 7 cut(s) | 549, 1122, 1179, 1346, 1443, 1682, 1917 |
| SatI | GCNGC | 6 cut(s) | 52, 226, 326, 507, 510, 1517 |
| Sau3AI | GATC | 4 cut(s) | 1185, 1460, 1591, 1731 |
| Sau96I | GGNCC | 5 cut(s) | 127, 423, 1074, 1400, 1576 |
| ScaI | AGTACT | 1 cut(s) | 1042 |
| SchI | GAGTC | 2 cut(s) | 305, 1829 |
| ScrFI | CCNGG | 4 cut(s) | 125, 294, 970, 1241 |
| SduI | GDGCHC | 6 cut(s) | 261, 354, 373, 594, 1410, 1431 |
| SfaNI | GCATC | 5 cut(s) | 1158, 1252, 1406, 1683, 1782 |
| Sfr303I | CCGCGG | 1 cut(s) | 510 |
| SgrBI | CCGCGG | 1 cut(s) | 510 |
| SinI | GGWCC | 3 cut(s) | 127, 423, 1576 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 653 |
| SmlI | CTYRAG | 2 cut(s) | 1436, 1628 |
| SmoI | CTYRAG | 2 cut(s) | 1436, 1628 |
| SpeI | ACTAGT | 1 cut(s) | 1703 |
| SspI | AATATT | 1 cut(s) | 1454 |
| SspMI | CTAG | 6 cut(s) | 201, 992, 1118, 1647, 1664, 1704 |
| SstI | GAGCTC | 2 cut(s) | 261, 1410 |
| StyD4I | CCNGG | 4 cut(s) | 123, 292, 968, 1239 |
| StyI | CCWWGG | 6 cut(s) | 396, 471, 670, 1138, 1607, 1646 |
| TaaI | ACNGT | 9 cut(s) | 67, 179, 568, 847, 881, 1310, 1556, 1912, 1948 |
| TaiI | ACGT | 4 cut(s) | 97, 280, 495, 1449 |
| TaqI | TCGA | 8 cut(s) | 255, 501, 573, 707, 1255, 1459, 1599, 1636 |
| TatI | WGTACW | 2 cut(s) | 1040, 1706 |
| TauI | GCSGC | 5 cut(s) | 54, 228, 328, 509, 512 |
| Tru1I | TTAA | 7 cut(s) | 549, 1122, 1179, 1346, 1443, 1682, 1917 |
| Tru9I | TTAA | 7 cut(s) | 549, 1122, 1179, 1346, 1443, 1682, 1917 |
| TscAI | CASTG | 4 cut(s) | 1338, 1813, 1858, 1966 |
| TseFI | GTSAC | 3 cut(s) | 391, 892, 1367 |
| TseI | GCWGC | 1 cut(s) | 1516 |
| Tsp45I | GTSAC | 3 cut(s) | 391, 892, 1367 |
| TspDTI | ATGAA | 6 cut(s) | 472, 530, 615, 701, 1016, 1844 |
| TspGWI | ACGGA | 2 cut(s) | 479, 1284 |
| TspRI | CASTG | 4 cut(s) | 1338, 1813, 1858, 1966 |
| Tth111I | GACNNNGTC | 1 cut(s) | 491 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1084 |
| VneI | GTGCAC | 1 cut(s) | 1427 |
| VpaK11BI | GGWCC | 3 cut(s) | 127, 423, 1576 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 598 |
| XapI | RAATTY | 3 cut(s) | 434, 1028, 1323 |
| XbaI | TCTAGA | 1 cut(s) | 991 |
| XceI | RCATGY | 3 cut(s) | 658, 1699, 1839 |
| XmaJI | CCTAGG | 1 cut(s) | 1646 |
| XmiI | GTMKAC | 1 cut(s) | 1995 |
| XmnI | GAANNNNTTC | 1 cut(s) | 762 |
| XspI | CTAG | 6 cut(s) | 201, 992, 1118, 1647, 1664, 1704 |
| ZrmI | AGTACT | 1 cut(s) | 1042 |