Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007260

Physical Location & Seq

Genomic Coordinates Reverse (-)

8580520 .. 8581593

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCGGCAAAAGTACAAGCACCCACTACTTCTTCCAGGCTGGGGCAAAACTTTACTGGGACGCCTACATGGTTTTTCAGCTACTTCCTTGAGGGTCGAATTATTCCAATGCACAAGGTTACTGACCGAGAATTGTATTAATTTAAAACTACGCTACATGCTGGCCTGCACGGATGAAGATTTTGAGAGGAGGGTCAAGACTAGAGTGGAAAGGCGGCGAAGATTTGAATCTGGTGGCTTGAGTGAGGATGTTTATAATTCCGCCATGAGTTTTGACGATGACTCGCCTGATCACGGTGAGAGTGAGGCAGAAACAACTATGTTTGATGACGGTGAAAGTGAGACAGAATTAAGCATGCTTGATGACAGCGATAGTGAATTTCTCCGACTTATCGGTCACAGCAACCCCCTCTCCCTTCACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

5.1

Isoelectric Point (pI)

63.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21710 AT2G21710 AT2G21710
fragaria_vesca	FvH4_2g08810 FvH4_2g08810 FvH4_2g08810 FvH4_2g08810
malus_domestica	MD05G1066000.v1.1
prunus_persica	Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1
pyrus_communis	pycom05g05740 pycom07g09330
rosa_chinensis	RchiOBHm_Chr6g0264281
rosa_laevigata	RLG00000014272
rosa_multiflora	Rmu_co8378781.1_g000001 Rmu_sc0010483.1_g000016
rosa_roxburghii	Rroxscaffold_176G00431680
rosa_rugosa	Rorug06G0011600 Rorug06G0011600
rosa_samantha	Rh6AG131200 Rh6BG128200 Rh6CG126600 Rh6DG113700
rosa_wichuraiana	Rw6G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AasI	GACNNNNNNGTC	1 cut(s)	393
AciI	CCGC	3 cut(s)	4, 214, 261
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	41, 293
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	308, 344
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	5, 215
BlsI	GCNGC	2 cut(s)	6, 216
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	109, 259
BsaBI	GATNNNNATC	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 293
Bse1I	ACTGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	178, 253
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	41, 293
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	41, 293
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	3 cut(s)	4, 214, 261
BspANI	GGCC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	296, 332
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	3 cut(s)	162, 166, 356
BstF5I	GGATG	2 cut(s)	178, 253
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	160, 358
BstSCI	CCNGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	178, 253
Cac8I	GCNNGC	3 cut(s)	162, 166, 356
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	4 cut(s)	68, 157, 265, 355
CviJI	RGCY	4 cut(s)	39, 80, 164, 237
CviKI_1	RGCY	4 cut(s)	39, 80, 164, 237
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraI	TTTAAA	1 cut(s)	144
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	34
FaeI	CATG	4 cut(s)	71, 160, 268, 358
FaiI	YATR	6 cut(s)	69, 158, 255, 266, 320, 356
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	4 cut(s)	67, 156, 264, 354
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	5, 215
FokI	GGATG	2 cut(s)	185, 260
Fsp4HI	GCNGC	2 cut(s)	5, 215
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	5, 215
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	71, 160, 268, 358
HinfI	GANTC	2 cut(s)	227, 281
HphI	GGTGA	2 cut(s)	308, 344
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	2 cut(s)	296, 332
HpyCH4V	TGCA	2 cut(s)	111, 168
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	71, 160, 268, 358
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	289
LpnPI	CCDG	8 cut(s)	21, 25, 41, 48, 146, 178, 216, 300
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	117, 395
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	23, 188, 231
MluCI	AATT	6 cut(s)	98, 130, 139, 256, 347, 377
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	6 cut(s)	84, 180, 183, 238, 298, 419
MseI	TTAA	3 cut(s)	138, 143, 350
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	4 cut(s)	71, 160, 268, 358
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	2 cut(s)	160, 358
PaeI	GCATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	6, 216
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	138, 143, 350
SatI	GCNGC	2 cut(s)	5, 215
Sau3AI	GATC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	2 cut(s)	82, 119
SmlI	CTYRAG	2 cut(s)	88, 238
SmoI	CTYRAG	2 cut(s)	88, 238
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	6 cut(s)	98, 130, 139, 256, 347, 377
SsiI	CCGC	3 cut(s)	4, 214, 261
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	296, 332
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	2 cut(s)	140, 383
TasI	AATT	6 cut(s)	98, 130, 139, 256, 347, 377
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	2 cut(s)	7, 217
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	138, 143, 350
Tru9I	TTAA	3 cut(s)	138, 143, 350
TseFI	GTSAC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	2 cut(s)	160, 358
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.