Rh6CG126600
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
15133556 .. 15139186
5631 bp
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UTR
Exon/CDS
Intron
Rh6CG126600.1

Sequence Viewer

Length: 1629 bp
ATGGTGGCGTTGTCTTCCTCACTCGCTCAACTCACTCCACTCCACCACCACCACCACCTTCACATTCACCTCAGCCCAACCACCACCATCTCCTGTCTCAACGAAACGCCACGTCATCAATCTCATCATGACGAACCCCCAGACCTCACTCTCCGCAAGCACAACTCCAAGTCCACCGCTCTCCTCCTCCACCGTCTCTCCCGCCACCCTAACCCTAACCCTAACGACCTCCAGCACCGCCGCCAGCTCCCTCCGGAGAACAAAGCCTTCGAGCTCTCTCTCCTCCCCAAGCGCACTCCTCAGTTCCCCGGCTCCATCTCCGGCGACTCCTCCTCCCCGACGCCGCTCCGCGACGACGACGACGAACACCGCATGATAATGCGGGCTCTGGAGATCCGCCGGAAGGTCACCAAGGAAATGTTCAAGGAGGCTATGAGGACGAAAGGAAAATTCGGCATCACCTACGCCACCAATTTGACGGAGACCTTGACCGACTTCATTGATTACGTCATGGTCGAGGCCGCCGCCATGAAACGCTCGCCGGAGTTCTCCAATTCCACTTTCAATTTTCGCGCCAAGACTGTTATTGAAAACTCCGAGGCTGTGCCTTGTATCAGGTGGTTGAAGCATAATTCACTTTCGTATCCCCAAATTGGGAAGCTCATTTGTATGTCAAAGGGAGACCTGGGGTCAATTAGACGCCGTGCCGAGTGGTTGAAGTCGATTCATGTTAAGGGGAGGTTTATAGGGGTTGCGCTGGTGAAAGGTGGGGATTGTTTTCTGGAGCGCAGCGATGAGGAATTGGATGAGATTGTTGAGTATTTGGAGAGAAATGGAGTTAGGAGGGATTGGATGGGGACTGTCATGAGCCGATGTCCGCAACTCTTGTCCTACAGTTTGGAGGAAGTGATGGCTCGTGTGGGGTTTTACTTGGATATGGGAATCAATGACAAGGATTTTGGCACAATGGTCTTTGACTATCCCAGGGTACTTGGCTACTATACTCTAGATGAGATGAACCAAAAGGTGAACTATTTGAAGGAATTTGGCCTTAGTACTGAGGATGTTGGCAAATTACTAGCATTTAGGCCCCAGCTGATGGGTTGTGGAATAGAGGAAAGATGGAAGCCCCTAGCTAAGTATTTGTATTACCTTGGAATTACCAGAGATGGTATGAGGAGGATGCTTACCATTAAACCGATTCTTTTCTGTGCTGATTTGGAGAAGACCATTGTGCCAAAGGTAAAATTTTTTCAGGACATAGGCATTCGAGATGATGCCATAGGAAAAATGCTTGTAAAGTTTCCTCCGTTGCTTACATACAGTCTATACAAGAAAATTCGGCCAGTGGTGATATTCTTGATTACGAAAGCTGGAGTTAGTGACAGAGATATTGGAAAGGTTATAGCTTTCGGACCAGAGCTCTTGGGATGCAACATTGTGCACAAGCTTGAGGTTAATGTAAAATATTTTCGATCACTTGGCATACACCTTAGCACATTGGGTGAGATGATAGCTGATTTCCCCATGCTGCTCCGATACAATACAGATGTCCTCCGTCCAAAATACAGATACCTGAGGAGAACTATGGTCCGCCCTTTGCGAGATCTGATTGAGTTTCCAAGGTGA

Protein Analysis

542

Amino Acids

62.51

Weight (kDa)

9.36

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 229 - 404 1.1e-21 mTERF
mTERF PF02536 272 - 542 8e-50 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1099
AccBSI CCGCTC 2 cut(s) 179, 346
AccII CGCG 2 cut(s) 351, 573
AccIII TCCGGA 1 cut(s) 253
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 1343
AcsI RAATTY 4 cut(s) 449, 1043, 1247, 1338
AcyI GRCGYC 2 cut(s) 341, 700
AfaI GTAC 2 cut(s) 990, 1057
AfiI CCNNNNNNNGG 4 cut(s) 403, 653, 654, 1099
AgsI TTSAA 6 cut(s) 424, 565, 590, 625, 718, 1039
AhdI GACNNNNNGTC 1 cut(s) 688
AjiI CACGTC 1 cut(s) 113
AjnI CCWGG 2 cut(s) 684, 983
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 545, 577
Alw21I GWGCWC 3 cut(s) 276, 1425, 1446
Alw26I GTCTC 4 cut(s) 101, 200, 476, 675
Alw44I GTGCAC 1 cut(s) 1442
AlwI GGATC 1 cut(s) 388
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 4 cut(s) 519, 1048, 1088, 1343
ApaLI GTGCAC 1 cut(s) 1442
ApeKI GCWGC 2 cut(s) 789, 1531
ApoI RAATTY 4 cut(s) 449, 1043, 1247, 1338
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AspLEI GCGC 4 cut(s) 294, 575, 757, 789
AspS9I GGNCC 3 cut(s) 1089, 1415, 1591
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 7 cut(s) 59, 400, 451, 772, 1039, 1363, 1517
AvaII GGWCC 2 cut(s) 1415, 1591
AxyI CCTNAGG 1 cut(s) 1577
BaeGI GKGCMC 1 cut(s) 1446
BaeI ACNNNNGTAYC 2 cut(s) 626, 659
BanII GRGCYC 3 cut(s) 276, 388, 1425
BauI CACGAG 1 cut(s) 915
BbsI GAAGAC 2 cut(s) 6, 1232
Bbv12I GWGCWC 3 cut(s) 276, 1425, 1446
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 801, 1518
BccI CCATC 7 cut(s) 95, 323, 847, 904, 1093, 1116, 1163
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 2 cut(s) 686, 985
BciVI GTATCC 1 cut(s) 654
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 4 cut(s) 101, 200, 476, 675
BfaI CTAG 3 cut(s) 1007, 1079, 1133
BfmI CTRYAG 1 cut(s) 892
BfuI GTATCC 1 cut(s) 654
BglII AGATCT 1 cut(s) 1606
BisI GCNGC 6 cut(s) 241, 344, 522, 525, 790, 1532
BlsI GCNGC 6 cut(s) 242, 345, 523, 526, 791, 1533
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 3 cut(s) 309, 686, 985
Bme18I GGWCC 2 cut(s) 1415, 1591
BmeRI GACNNNNNGTC 1 cut(s) 688
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 1089, 1415, 1591
BmiI GGNNCC 2 cut(s) 313, 1091
BmrFI CCNGG 3 cut(s) 309, 686, 985
BmsI GCATC 4 cut(s) 465, 1173, 1267, 1421
BpiI GAAGAC 2 cut(s) 6, 1232
BpmI CTGGAG 4 cut(s) 215, 410, 803, 1395
Bpu10I CCTNAGC 2 cut(s) 71, 1493
BpuEI CTTGAG 1 cut(s) 1472
BpuMI CCSGG 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 341, 700
BsaI GGTCTC 2 cut(s) 476, 675
BsaJI CCNNGG 8 cut(s) 307, 411, 597, 685, 983, 984, 1153, 1622
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 317, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 403, 653, 654, 1099
Bse1I ACTGG 1 cut(s) 1346
Bse21I CCTNAGG 1 cut(s) 1577
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 2 cut(s) 686, 985
BseDI CCNNGG 8 cut(s) 307, 411, 597, 685, 983, 984, 1153, 1622
BseGI GGATG 5 cut(s) 811, 858, 1069, 1188, 1436
BseLI CCNNNNNNNGG 4 cut(s) 403, 653, 654, 1099
BseMII CTCAG 4 cut(s) 85, 314, 1050, 1568
BseNI ACTGG 1 cut(s) 1346
BseRI GAGGAG 8 cut(s) 173, 176, 272, 288, 319, 322, 1192, 1594
BseSI GKGCMC 1 cut(s) 1446
BseXI GCAGC 2 cut(s) 801, 1518
BseYI CCCAGC 1 cut(s) 1092
Bsh1236I CGCG 2 cut(s) 351, 573
BshFI GGCC 4 cut(s) 521, 1050, 1090, 1345
BsiHKAI GWGCWC 3 cut(s) 276, 1425, 1446
BsiSI CCGG 5 cut(s) 254, 309, 321, 400, 542
BslFI GGGAC 1 cut(s) 871
BslI CCNNNNNNNGG 4 cut(s) 403, 653, 654, 1099
BsmAI GTCTC 4 cut(s) 101, 200, 476, 675
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 871
BsmI GAATGC 1 cut(s) 1266
BsnI GGCC 4 cut(s) 521, 1050, 1090, 1345
Bso31I GGTCTC 2 cut(s) 476, 675
Bsp1286I GDGCHC 4 cut(s) 276, 388, 1425, 1446
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 3 cut(s) 393, 1475, 1606
BspANI GGCC 4 cut(s) 521, 1050, 1090, 1345
BspCNI CTCAG 4 cut(s) 84, 313, 1051, 1569
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 2 cut(s) 351, 573
BspHI TCATGA 2 cut(s) 127, 864
BspLI GGNNCC 2 cut(s) 313, 1091
BspPI GGATC 1 cut(s) 388
BspTNI GGTCTC 2 cut(s) 476, 675
BsrBI CCGCTC 2 cut(s) 179, 346
BsrI ACTGG 1 cut(s) 1346
BssECI CCNNGG 8 cut(s) 307, 411, 597, 685, 983, 984, 1153, 1622
BssMI GATC 3 cut(s) 393, 1475, 1606
BssNI GRCGYC 2 cut(s) 341, 700
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 3 cut(s) 411, 1153, 1622
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 2 cut(s) 686, 985
Bst4CI ACNGT 5 cut(s) 194, 583, 862, 896, 1325
BstACI GRCGYC 2 cut(s) 341, 700
BstC8I GCNNGC 4 cut(s) 158, 245, 384, 539
BstDEI CTNAG 7 cut(s) 71, 300, 1052, 1059, 1137, 1493, 1577
BstEII GGTNACC 1 cut(s) 406
BstF5I GGATG 5 cut(s) 811, 858, 1069, 1188, 1436
BstFNI CGCG 2 cut(s) 351, 573
BstHHI GCGC 4 cut(s) 294, 575, 757, 789
BstKTI GATC 3 cut(s) 396, 1478, 1609
BstMAI GTCTC 4 cut(s) 101, 200, 476, 675
BstMBI GATC 3 cut(s) 393, 1475, 1606
BstNI CCWGG 2 cut(s) 686, 985
BstPI GGTNACC 1 cut(s) 406
BstSCI CCNGG 3 cut(s) 307, 684, 983
BstSFI CTRYAG 1 cut(s) 892
BstSLI GKGCMC 1 cut(s) 1446
BstUI CGCG 2 cut(s) 351, 573
BstV1I GCAGC 2 cut(s) 801, 1518
BstV2I GAAGAC 2 cut(s) 6, 1232
BstX2I RGATCY 2 cut(s) 393, 1606
BstYI RGATCY 2 cut(s) 393, 1606
Bsu36I CCTNAGG 1 cut(s) 1577
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 4 cut(s) 521, 1050, 1090, 1345
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 5 cut(s) 811, 858, 1069, 1188, 1436
BtsIMutI CAGTG 1 cut(s) 1353
Cac8I GCNNGC 4 cut(s) 158, 245, 384, 539
CciI TCATGA 2 cut(s) 127, 864
CfoI GCGC 4 cut(s) 294, 575, 757, 789
Cfr13I GGNCC 3 cut(s) 1089, 1415, 1591
CseI GACGC 2 cut(s) 349, 708
Csp6I GTAC 2 cut(s) 989, 1056
CviAII CATG 7 cut(s) 128, 373, 511, 529, 728, 865, 1528
CviQI GTAC 2 cut(s) 989, 1056
DdeI CTNAG 7 cut(s) 71, 300, 1052, 1059, 1137, 1493, 1577
DpnI GATC 3 cut(s) 395, 1477, 1608
DpnII GATC 3 cut(s) 393, 1475, 1606
DriI GACNNNNNGTC 1 cut(s) 688
EaeI YGGCCR 1 cut(s) 1343
Eam1105I GACNNNNNGTC 1 cut(s) 688
EciI GGCGGA 2 cut(s) 386, 1583
Ecl136II GAGCTC 2 cut(s) 274, 1423
Eco130I CCWWGG 3 cut(s) 411, 1153, 1622
Eco24I GRGCYC 3 cut(s) 276, 388, 1425
Eco31I GGTCTC 2 cut(s) 476, 675
Eco47I GGWCC 2 cut(s) 1415, 1591
Eco53kI GAGCTC 2 cut(s) 274, 1423
Eco81I CCTNAGG 1 cut(s) 1577
Eco91I GGTNACC 1 cut(s) 406
EcoICRI GAGCTC 2 cut(s) 274, 1423
EcoO109I RGGNCCY 1 cut(s) 1089
EcoO65I GGTNACC 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 684, 983
EcoT14I CCWWGG 3 cut(s) 411, 1153, 1622
EcoT38I GRGCYC 3 cut(s) 276, 388, 1425
ErhI CCWWGG 3 cut(s) 411, 1153, 1622
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 7 cut(s) 131, 376, 514, 532, 731, 868, 1531
FaqI GGGAC 1 cut(s) 871
FatI CATG 7 cut(s) 127, 372, 510, 528, 727, 864, 1527
FauI CCCGC 2 cut(s) 209, 375
Fnu4HI GCNGC 6 cut(s) 241, 344, 522, 525, 790, 1532
FokI GGATG 5 cut(s) 818, 865, 1076, 1195, 1443
FriOI GRGCYC 3 cut(s) 276, 388, 1425
Fsp4HI GCNGC 6 cut(s) 241, 344, 522, 525, 790, 1532
FspBI CTAG 3 cut(s) 1007, 1079, 1133
GlaI GCGC 4 cut(s) 293, 574, 756, 788
GluI GCNGC 6 cut(s) 241, 344, 522, 525, 790, 1532
GsaI CCCAGC 1 cut(s) 1096
GsuI CTGGAG 4 cut(s) 215, 410, 803, 1395
HaeIII GGCC 4 cut(s) 521, 1050, 1090, 1345
HapII CCGG 5 cut(s) 254, 309, 321, 400, 542
HgaI GACGC 2 cut(s) 349, 708
HhaI GCGC 4 cut(s) 294, 575, 757, 789
Hin1I GRCGYC 2 cut(s) 341, 700
Hin1II CATG 7 cut(s) 131, 376, 514, 532, 731, 868, 1531
Hin6I GCGC 4 cut(s) 292, 573, 755, 787
HinP1I GCGC 4 cut(s) 292, 573, 755, 787
HindIII AAGCTT 1 cut(s) 1448
HinfI GANTC 4 cut(s) 326, 724, 942, 1201
HpaII CCGG 5 cut(s) 254, 309, 321, 400, 542
HphI GGTGA 7 cut(s) 59, 400, 451, 772, 1039, 1363, 1517
Hpy166II GTNNAC 3 cut(s) 174, 1030, 1444
Hpy188I TCNGA 4 cut(s) 598, 1415, 1538, 1611
Hpy188III TCNNGA 9 cut(s) 128, 254, 389, 782, 865, 1007, 1256, 1271, 1360
Hpy8I GTNNAC 3 cut(s) 174, 1030, 1444
Hpy99I CGWCG 5 cut(s) 343, 356, 359, 362, 365
HpyAV CCTTC 4 cut(s) 68, 277, 397, 1033
HpyCH4III ACNGT 5 cut(s) 194, 583, 862, 896, 1325
HpyCH4IV ACGT 2 cut(s) 112, 507
HpyCH4V TGCA 2 cut(s) 1434, 1444
HpyF3I CTNAG 7 cut(s) 71, 300, 1052, 1059, 1137, 1493, 1577
HpySE526I ACGT 2 cut(s) 112, 507
Hsp92I GRCGYC 2 cut(s) 341, 700
Hsp92II CATG 7 cut(s) 131, 376, 514, 532, 731, 868, 1531
HspAI GCGC 4 cut(s) 292, 573, 755, 787
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 393, 1475, 1606
LmnI GCTCC 5 cut(s) 252, 317, 351, 784, 1539
Lsp1109I GCAGC 2 cut(s) 801, 1518
LweI GCATC 4 cut(s) 465, 1173, 1267, 1421
MaeI CTAG 3 cut(s) 1007, 1079, 1133
MaeII ACGT 2 cut(s) 112, 507
MaeIII GTNAC 2 cut(s) 406, 1382
MalI GATC 3 cut(s) 395, 1477, 1608
MbiI CCGCTC 2 cut(s) 179, 346
MboI GATC 3 cut(s) 393, 1475, 1606
MboII GAAGA 2 cut(s) 6, 1237
MflI RGATCY 2 cut(s) 393, 1606
MhlI GDGCHC 4 cut(s) 276, 388, 1425, 1446
MlyI GAGTC 1 cut(s) 320
MroI TCCGGA 1 cut(s) 253
MseI TTAA 3 cut(s) 732, 1194, 1458
MslI CAYNNNNRTG 2 cut(s) 377, 668
MspA1I CMGCKG 1 cut(s) 1096
MspI CCGG 5 cut(s) 254, 309, 321, 400, 542
MspR9I CCNGG 3 cut(s) 309, 686, 985
Mva1269I GAATGC 1 cut(s) 1266
MvaI CCWGG 2 cut(s) 686, 985
MvnI CGCG 2 cut(s) 351, 573
NciI CCSGG 1 cut(s) 309
NdeII GATC 3 cut(s) 393, 1475, 1606
NlaIII CATG 7 cut(s) 131, 376, 514, 532, 731, 868, 1531
NlaIV GGNNCC 2 cut(s) 313, 1091
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 2 cut(s) 406, 1382
PagI TCATGA 2 cut(s) 127, 864
PasI CCCWGGG 1 cut(s) 984
PcsI WCGNNNNNNNCGW 2 cut(s) 360, 513
PctI GAATGC 1 cut(s) 1266
PfeI GAWTC 3 cut(s) 724, 942, 1201
PflMI CCANNNNNTGG 1 cut(s) 1099
PkrI GCNGC 6 cut(s) 242, 345, 523, 526, 791, 1533
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Psp124BI GAGCTC 2 cut(s) 276, 1425
Psp6I CCWGG 2 cut(s) 684, 983
PspEI GGTNACC 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 1092
PspGI CCWGG 2 cut(s) 684, 983
PspN4I GGNNCC 2 cut(s) 313, 1091
PspPI GGNCC 3 cut(s) 1089, 1415, 1591
PsuI RGATCY 2 cut(s) 393, 1606
PvuII CAGCTG 1 cut(s) 1096
RsaI GTAC 2 cut(s) 990, 1057
RsaNI GTAC 2 cut(s) 989, 1056
RseI CAYNNNNRTG 2 cut(s) 377, 668
SacI GAGCTC 2 cut(s) 276, 1425
SaqAI TTAA 3 cut(s) 732, 1194, 1458
SatI GCNGC 6 cut(s) 241, 344, 522, 525, 790, 1532
Sau3AI GATC 3 cut(s) 393, 1475, 1606
Sau96I GGNCC 3 cut(s) 1089, 1415, 1591
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 309, 686, 985
SduI GDGCHC 4 cut(s) 276, 388, 1425, 1446
SfaNI GCATC 4 cut(s) 465, 1173, 1267, 1421
SfcI CTRYAG 1 cut(s) 892
SinI GGWCC 2 cut(s) 1415, 1591
SmiMI CAYNNNNRTG 2 cut(s) 377, 668
SmlI CTYRAG 1 cut(s) 1451
SmoI CTYRAG 1 cut(s) 1451
SspI AATATT 1 cut(s) 1469
SspMI CTAG 3 cut(s) 1007, 1079, 1133
SstI GAGCTC 2 cut(s) 276, 1425
StyD4I CCNGG 3 cut(s) 307, 684, 983
StyI CCWWGG 3 cut(s) 411, 1153, 1622
TaaI ACNGT 5 cut(s) 194, 583, 862, 896, 1325
TaiI ACGT 2 cut(s) 115, 510
TaqI TCGA 5 cut(s) 270, 516, 722, 1270, 1474
TaqII GACCGA 1 cut(s) 506
TatI WGTACW 1 cut(s) 1055
TauI GCSGC 4 cut(s) 243, 346, 524, 527
TfiI GAWTC 3 cut(s) 724, 942, 1201
Tru1I TTAA 3 cut(s) 732, 1194, 1458
Tru9I TTAA 3 cut(s) 732, 1194, 1458
TscAI CASTG 1 cut(s) 1353
TseFI GTSAC 2 cut(s) 406, 1382
TseI GCWGC 2 cut(s) 789, 1531
Tsp45I GTSAC 2 cut(s) 406, 1382
TspDTI ATGAA 4 cut(s) 487, 545, 716, 1031
TspGWI ACGGA 3 cut(s) 494, 1299, 1547
TspRI CASTG 1 cut(s) 1353
Van91I CCANNNNNTGG 1 cut(s) 1099
VneI GTGCAC 1 cut(s) 1442
VpaK11BI GGWCC 2 cut(s) 1415, 1591
XapI RAATTY 4 cut(s) 449, 1043, 1247, 1338
XbaI TCTAGA 1 cut(s) 1006
XspI CTAG 3 cut(s) 1007, 1079, 1133
ZrmI AGTACT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.