Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378781.1

Orthogroup ID

OG0007260

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1157

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ccaccaccaccaccaccttcactttcacctccgcccaaccacctccacctccgccaccatctcctgtctcaacgaaacgccacgtcatcactctcatcatgacgaacccccagacctcactctccgcaagcacaactccaagtccaccgctctcctcctccaccgtctctcccgccaccctaaccctaaccctaacgacctccagcaccgtcgccagctccctccggagaacaaagccttcgagctctctctcctccccaagcgcactcctcagttccccggctccatctccggcgactcctcctctccgacgccgctccgcgacgacgacgacgaacaccgcatgataatgcgggctctggagatccgccggaaggtcaccaaggaaatgttcaaggaggctatgaggacgaaaggaaaattcggaatcacctacgccaccaatttgacggagacattgaccgacttcattgattacgtcatggtcgaggccgccgccatgaaacgctcgccggagttctccaattccactttcaattttcgcgccaagactgttattgaaaactccgaggccgtgccctgtatcaggtggttgaagcataattcactttcgtatccccaaattgggaagctcatttgtatgtcaaagggagacctggggtcaattagacgccgtgccgagtggttgaagtcgattcatgttaaggggaggtttataggagttgcgctggtgaaaggtggggattgttttctggagcggagcaatgaggaattggatgagattgttgagtatttggagagaaatggagttaggagggattggatggggactgtcatgagccgatgtccgcaactattgtcctacagtttggaggaagtgatagttcgtgtggggttttacttggatatgggaatcaatgacaaagattttggcacaatggtctttgactatcccagggtacttggctactatactctagatgagatgaaccaaaaggtagctgacactccttactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

339

Amino Acids

39.1

Weight (kDa)

8.7

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21710 AT2G21710 AT2G21710
fragaria_vesca	FvH4_2g08810 FvH4_2g08810 FvH4_2g08810 FvH4_2g08810
malus_domestica	MD05G1066000.v1.1
prunus_persica	Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1
pyrus_communis	pycom05g05740 pycom07g09330
rosa_chinensis	RchiOBHm_Chr6g0264281
rosa_laevigata	RLG00000014272
rosa_multiflora	Rmu_co8378781.1_g000001 Rmu_sc0010483.1_g000016
rosa_roxburghii	Rroxscaffold_176G00431680
rosa_rugosa	Rorug06G0011600 Rorug06G0011600
rosa_samantha	Rh6AG131200 Rh6BG128200 Rh6CG126600 Rh6DG113700
rosa_wichuraiana	Rw6G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	150, 317, 758
AccII	CGCG	2 cut(s)	322, 544
AccIII	TCCGGA	1 cut(s)	224
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	312, 671
AfaI	GTAC	1 cut(s)	961
AfiI	CCNNNNNNNGG	4 cut(s)	374, 586, 624, 625
AgsI	TTSAA	5 cut(s)	395, 536, 561, 596, 689
AhdI	GACNNNNNGTC	1 cut(s)	659
AjiI	CACGTC	1 cut(s)	84
AjnI	CCWGG	2 cut(s)	655, 954
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 516, 548
AluBI	AGCT	4 cut(s)	218, 245, 632, 1002
AluI	AGCT	4 cut(s)	218, 245, 632, 1002
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	4 cut(s)	72, 171, 447, 646
AlwI	GGATC	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	490, 571
ApoI	RAATTY	1 cut(s)	420
ArsI	GACNNNNNNTTYG	2 cut(s)	912, 944
AspLEI	GCGC	3 cut(s)	265, 546, 728
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	4 cut(s)	18, 371, 422, 743
BaeGI	GKGCMC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	597, 630
BanII	GRGCYC	2 cut(s)	247, 359
Bbv12I	GWGCWC	1 cut(s)	247
BccI	CCATC	3 cut(s)	66, 294, 818
BceAI	ACGGC	2 cut(s)	558, 658
BciT130I	CCWGG	2 cut(s)	657, 956
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	72, 171, 447, 646
BfaI	CTAG	1 cut(s)	978
BfmI	CTRYAG	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	3 cut(s)	315, 493, 496
BlsI	GCNGC	3 cut(s)	316, 494, 497
Bme1390I	CCNGG	3 cut(s)	280, 657, 956
BmeRI	GACNNNNNGTC	1 cut(s)	659
BmgBI	CACGTC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	280, 657, 956
BpmI	CTGGAG	3 cut(s)	186, 381, 774
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	2 cut(s)	312, 671
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	6 cut(s)	278, 382, 568, 656, 954, 955
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	4 cut(s)	374, 586, 624, 625
Bse3DI	GCAATG	1 cut(s)	770
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	657, 956
BseDI	CCNNGG	6 cut(s)	278, 382, 568, 656, 954, 955
BseGI	GGATG	2 cut(s)	782, 829
BseLI	CCNNNNNNNGG	4 cut(s)	374, 586, 624, 625
BseMI	GCAATG	1 cut(s)	770
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	6 cut(s)	144, 147, 243, 259, 290, 293
BseSI	GKGCMC	1 cut(s)	580
Bsh1236I	CGCG	2 cut(s)	322, 544
BshFI	GGCC	2 cut(s)	492, 573
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	5 cut(s)	225, 280, 292, 371, 513
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	4 cut(s)	374, 586, 624, 625
BsmAI	GTCTC	4 cut(s)	72, 171, 447, 646
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	842
BsnI	GGCC	2 cut(s)	492, 573
Bso31I	GGTCTC	1 cut(s)	646
Bsp1286I	GDGCHC	3 cut(s)	247, 359, 580
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	492, 573
BspCNI	CTCAG	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	2 cut(s)	322, 544
BspHI	TCATGA	2 cut(s)	98, 835
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	646
BsrBI	CCGCTC	3 cut(s)	150, 317, 758
BsrDI	GCAATG	1 cut(s)	770
BssECI	CCNNGG	6 cut(s)	278, 382, 568, 656, 954, 955
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	2 cut(s)	312, 671
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	657, 956
Bst4CI	ACNGT	5 cut(s)	165, 210, 554, 833, 867
BstACI	GRCGYC	2 cut(s)	312, 671
BstC8I	GCNNGC	4 cut(s)	129, 216, 355, 510
BstDEI	CTNAG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	377
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	782, 829
BstFNI	CGCG	2 cut(s)	322, 544
BstHHI	GCGC	3 cut(s)	265, 546, 728
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	4 cut(s)	72, 171, 447, 646
BstMBI	GATC	1 cut(s)	364
BstNI	CCWGG	2 cut(s)	657, 956
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	278, 655, 954
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	2 cut(s)	322, 544
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	492, 573
BtrI	CACGTC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	782, 829
Cac8I	GCNNGC	4 cut(s)	129, 216, 355, 510
CciI	TCATGA	2 cut(s)	98, 835
CfoI	GCGC	3 cut(s)	265, 546, 728
CseI	GACGC	2 cut(s)	320, 679
Csp6I	GTAC	1 cut(s)	960
CviAII	CATG	6 cut(s)	99, 344, 482, 500, 699, 836
CviQI	GTAC	1 cut(s)	960
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DriI	GACNNNNNGTC	1 cut(s)	659
Eam1105I	GACNNNNNGTC	1 cut(s)	659
EciI	GGCGGA	3 cut(s)	21, 41, 357
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	247, 359
Eco31I	GGTCTC	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	655, 954
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	2 cut(s)	247, 359
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	6 cut(s)	102, 347, 485, 503, 702, 839
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	6 cut(s)	98, 343, 481, 499, 698, 835
FauI	CCCGC	2 cut(s)	180, 346
Fnu4HI	GCNGC	3 cut(s)	315, 493, 496
FokI	GGATG	2 cut(s)	789, 836
FriOI	GRGCYC	2 cut(s)	247, 359
Fsp4HI	GCNGC	3 cut(s)	315, 493, 496
FspBI	CTAG	1 cut(s)	978
GlaI	GCGC	3 cut(s)	264, 545, 727
GluI	GCNGC	3 cut(s)	315, 493, 496
GsuI	CTGGAG	3 cut(s)	186, 381, 774
HaeIII	GGCC	2 cut(s)	492, 573
HapII	CCGG	5 cut(s)	225, 280, 292, 371, 513
HgaI	GACGC	2 cut(s)	320, 679
HhaI	GCGC	3 cut(s)	265, 546, 728
Hin1I	GRCGYC	2 cut(s)	312, 671
Hin1II	CATG	6 cut(s)	102, 347, 485, 503, 702, 839
Hin6I	GCGC	3 cut(s)	263, 544, 726
HinP1I	GCGC	3 cut(s)	263, 544, 726
HinfI	GANTC	4 cut(s)	297, 427, 695, 913
HpaII	CCGG	5 cut(s)	225, 280, 292, 371, 513
HphI	GGTGA	4 cut(s)	18, 371, 422, 743
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	310, 426, 569
Hpy188III	TCNNGA	6 cut(s)	99, 225, 360, 753, 836, 978
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	6 cut(s)	214, 314, 327, 330, 333, 336
HpyAV	CCTTC	3 cut(s)	27, 248, 368
HpyCH4III	ACNGT	5 cut(s)	165, 210, 554, 833, 867
HpyCH4IV	ACGT	2 cut(s)	83, 478
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	2 cut(s)	83, 478
Hsp92I	GRCGYC	2 cut(s)	312, 671
Hsp92II	CATG	6 cut(s)	102, 347, 485, 503, 702, 839
HspAI	GCGC	3 cut(s)	263, 544, 726
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	5 cut(s)	223, 288, 322, 755, 760
MaeI	CTAG	1 cut(s)	978
MaeII	ACGT	2 cut(s)	83, 478
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	366
MbiI	CCGCTC	3 cut(s)	150, 317, 758
MboI	GATC	1 cut(s)	364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	3 cut(s)	247, 359, 580
MluCI	AATT	8 cut(s)	420, 443, 524, 536, 602, 622, 664, 771
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	333
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	1 cut(s)	703
MslI	CAYNNNNRTG	2 cut(s)	348, 639
MspI	CCGG	5 cut(s)	225, 280, 292, 371, 513
MspR9I	CCNGG	3 cut(s)	280, 657, 956
MvaI	CCWGG	2 cut(s)	657, 956
MvnI	CGCG	2 cut(s)	322, 544
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	6 cut(s)	102, 347, 485, 503, 702, 839
NlaIV	GGNNCC	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	704
NmuCI	GTSAC	1 cut(s)	377
PagI	TCATGA	2 cut(s)	98, 835
PasI	CCCWGGG	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	2 cut(s)	331, 484
PfeI	GAWTC	3 cut(s)	427, 695, 913
PkrI	GCNGC	3 cut(s)	316, 494, 497
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	655, 954
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	655, 954
PspN4I	GGNNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	961
RsaNI	GTAC	1 cut(s)	960
RseI	CAYNNNNRTG	2 cut(s)	348, 639
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	703
SatI	GCNGC	3 cut(s)	315, 493, 496
Sau3AI	GATC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	3 cut(s)	280, 657, 956
SduI	GDGCHC	3 cut(s)	247, 359, 580
SfcI	CTRYAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	2 cut(s)	348, 639
Sse9I	AATT	8 cut(s)	420, 443, 524, 536, 602, 622, 664, 771
SspMI	CTAG	1 cut(s)	978
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	278, 655, 954
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	5 cut(s)	165, 210, 554, 833, 867
TaiI	ACGT	2 cut(s)	86, 481
TaqI	TCGA	3 cut(s)	241, 487, 693
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	8 cut(s)	420, 443, 524, 536, 602, 622, 664, 771
TauI	GCSGC	3 cut(s)	317, 495, 498
TfiI	GAWTC	3 cut(s)	427, 695, 913
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	458, 516, 687, 1002
TspGWI	ACGGA	1 cut(s)	465
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	1 cut(s)	420
XbaI	TCTAGA	1 cut(s)	977
XspI	CTAG	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.