Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010483.1

Orthogroup ID

OG0007260

Physical Location & Seq

Genomic Coordinates Forward (+)

41131 .. 42754

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010483.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atggtggcgttgtcttcctcactcgctcaactcactccactccaccaccaccaccaccttcactttcacctccgcccaaccacctccacctccgccaccatctcctgtctcaacgaaacgccacgtcatcactctcatcatgacgaacccccagacctcactctccgcaagcacaactccaagtccaccgctctcctcctccaccgtctctcccgccaccctaaccctaaccctaacgacctccagcaccgtcgccagctccctccggagaacaaagccttcgagctctctctcctccccaagcgcactcctcagttccccggctccatctccggcgactcctcctccccgacgccgctccgcgacgacgacgacgaacaccgcatgataatgcgggctctggagatccgccggaaggtcaccaaggaaatgttcaaggaggctatgaggacgaaaggaaaattcggaatcacctacgccaccaatttgacggagacattgaccgacttcattgattacgtcatggtcgaggccgccgccatgaaacgctcgccggagttctccaattccactttcaattttcgcgccaagactgttattgaaaactccgaggccgtgccctgtatcaggtggttgaagcataattcactttcgtatccccaaattgggaagctcatttgtatgtcaaagggagacctggggtcaattagacgccgtgccgagtggttgaagtcgattcatgttaaggggaggtttataggagttgcgctggtgaaaggtggggattgttttctggagcggagcaatgaggaattggatgagattgttgagtatttggagagaaatggagttaggagggattggatggggactgtcatgagccgatgtccgcaactattgtcctacagtttggaggaagtgatagttcgtgtggggttttacttggatatgggaatcaatgacaaagattttggcacaatggtctttgactatcccagggtacttggctactatactctagatgagatgaaccaaaaggtgaactatttgaaggaatttggccttagtactgaggatgttggcaaattactagcatttaggccccagctaatgggttgtggaatagaggaaagatggaagcccctagttaagtatttgtattaccttggaattaccagagatggtatgaggaggatgcttaccattaaaccgattcttttctgtgctgatttggagaagaccattgtgccaaaggtatgccagatacttatgtgctttaattttgatgttgccgcaaacctatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

435

Amino Acids

50.01

Weight (kDa)

8.91

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21710 AT2G21710 AT2G21710
fragaria_vesca	FvH4_2g08810 FvH4_2g08810 FvH4_2g08810 FvH4_2g08810
malus_domestica	MD05G1066000.v1.1
prunus_persica	Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1 Prupe.8G096600_v2.0.a1
pyrus_communis	pycom05g05740 pycom07g09330
rosa_chinensis	RchiOBHm_Chr6g0264281
rosa_laevigata	RLG00000014272
rosa_multiflora	Rmu_co8378781.1_g000001 Rmu_sc0010483.1_g000016
rosa_roxburghii	Rroxscaffold_176G00431680
rosa_rugosa	Rorug06G0011600 Rorug06G0011600
rosa_samantha	Rh6AG131200 Rh6BG128200 Rh6CG126600 Rh6DG113700
rosa_wichuraiana	Rw6G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1111
AccBSI	CCGCTC	3 cut(s)	191, 358, 799
AccII	CGCG	2 cut(s)	363, 585
AccIII	TCCGGA	1 cut(s)	265
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	461, 1055
AcyI	GRCGYC	2 cut(s)	353, 712
AfaI	GTAC	2 cut(s)	1002, 1069
AfiI	CCNNNNNNNGG	5 cut(s)	415, 627, 665, 666, 1111
AgsI	TTSAA	6 cut(s)	436, 577, 602, 637, 730, 1051
AhdI	GACNNNNNGTC	1 cut(s)	700
AjiI	CACGTC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	696, 995
AjuI	GAANNNNNNNTTGG	4 cut(s)	416, 448, 557, 589
AluBI	AGCT	4 cut(s)	259, 286, 673, 1108
AluI	AGCT	4 cut(s)	259, 286, 673, 1108
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	4 cut(s)	113, 212, 488, 687
AlwI	GGATC	1 cut(s)	400
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	4 cut(s)	531, 612, 1060, 1100
ApoI	RAATTY	2 cut(s)	461, 1055
ArsI	GACNNNNNNTTYG	2 cut(s)	953, 985
AspLEI	GCGC	3 cut(s)	306, 587, 769
AspS9I	GGNCC	1 cut(s)	1101
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	5 cut(s)	59, 412, 463, 784, 1051
BaeGI	GKGCMC	1 cut(s)	621
BaeI	ACNNNNGTAYC	4 cut(s)	638, 671, 1256, 1289
BanII	GRGCYC	2 cut(s)	288, 400
BbsI	GAAGAC	2 cut(s)	6, 1244
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	5 cut(s)	107, 335, 859, 1128, 1175
BceAI	ACGGC	2 cut(s)	599, 699
BciT130I	CCWGG	2 cut(s)	698, 997
BciVI	GTATCC	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	4 cut(s)	113, 212, 488, 687
BfaI	CTAG	3 cut(s)	1019, 1091, 1145
BfmI	CTRYAG	1 cut(s)	904
BfuI	GTATCC	1 cut(s)	666
BisI	GCNGC	4 cut(s)	356, 534, 537, 1293
BlsI	GCNGC	4 cut(s)	357, 535, 538, 1294
BmcAI	AGTACT	1 cut(s)	1069
Bme1390I	CCNGG	3 cut(s)	321, 698, 997
BmeRI	GACNNNNNGTC	1 cut(s)	700
BmgBI	CACGTC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	1101
BmiI	GGNNCC	2 cut(s)	325, 1103
BmrFI	CCNGG	3 cut(s)	321, 698, 997
BmsI	GCATC	1 cut(s)	1185
BpiI	GAAGAC	2 cut(s)	6, 1244
BpmI	CTGGAG	3 cut(s)	227, 422, 815
BpuMI	CCSGG	1 cut(s)	321
BsaHI	GRCGYC	2 cut(s)	353, 712
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	7 cut(s)	319, 423, 609, 697, 995, 996, 1165
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 329, 359
Bsc4I	CCNNNNNNNGG	5 cut(s)	415, 627, 665, 666, 1111
Bse3DI	GCAATG	1 cut(s)	811
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	698, 997
BseDI	CCNNGG	7 cut(s)	319, 423, 609, 697, 995, 996, 1165
BseGI	GGATG	4 cut(s)	823, 870, 1081, 1200
BseLI	CCNNNNNNNGG	5 cut(s)	415, 627, 665, 666, 1111
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	2 cut(s)	326, 1062
BseRI	GAGGAG	7 cut(s)	185, 188, 284, 300, 331, 334, 1204
BseSI	GKGCMC	1 cut(s)	621
BseYI	CCCAGC	1 cut(s)	1104
Bsh1236I	CGCG	2 cut(s)	363, 585
BshFI	GGCC	4 cut(s)	533, 614, 1062, 1102
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	5 cut(s)	266, 321, 333, 412, 554
BslFI	GGGAC	1 cut(s)	883
BslI	CCNNNNNNNGG	5 cut(s)	415, 627, 665, 666, 1111
BsmAI	GTCTC	4 cut(s)	113, 212, 488, 687
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	883
BsnI	GGCC	4 cut(s)	533, 614, 1062, 1102
Bso31I	GGTCTC	1 cut(s)	687
Bsp1286I	GDGCHC	3 cut(s)	288, 400, 621
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	405
BspANI	GGCC	4 cut(s)	533, 614, 1062, 1102
BspCNI	CTCAG	2 cut(s)	325, 1063
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	363, 585
BspHI	TCATGA	2 cut(s)	139, 876
BspLI	GGNNCC	2 cut(s)	325, 1103
BspPI	GGATC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	687
BsrBI	CCGCTC	3 cut(s)	191, 358, 799
BsrDI	GCAATG	1 cut(s)	811
BssECI	CCNNGG	7 cut(s)	319, 423, 609, 697, 995, 996, 1165
BssMI	GATC	1 cut(s)	405
BssNI	GRCGYC	2 cut(s)	353, 712
BssT1I	CCWWGG	2 cut(s)	423, 1165
Bst2UI	CCWGG	2 cut(s)	698, 997
Bst4CI	ACNGT	5 cut(s)	206, 251, 595, 874, 908
BstACI	GRCGYC	2 cut(s)	353, 712
BstC8I	GCNNGC	4 cut(s)	170, 257, 396, 551
BstDEI	CTNAG	3 cut(s)	312, 1064, 1071
BstEII	GGTNACC	1 cut(s)	418
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	4 cut(s)	823, 870, 1081, 1200
BstFNI	CGCG	2 cut(s)	363, 585
BstHHI	GCGC	3 cut(s)	306, 587, 769
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	4 cut(s)	113, 212, 488, 687
BstMBI	GATC	1 cut(s)	405
BstNI	CCWGG	2 cut(s)	698, 997
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	319, 696, 995
BstSFI	CTRYAG	1 cut(s)	904
BstSLI	GKGCMC	1 cut(s)	621
BstUI	CGCG	2 cut(s)	363, 585
BstV2I	GAAGAC	2 cut(s)	6, 1244
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	4 cut(s)	533, 614, 1062, 1102
BtrI	CACGTC	1 cut(s)	125
BtsCI	GGATG	4 cut(s)	823, 870, 1081, 1200
Cac8I	GCNNGC	4 cut(s)	170, 257, 396, 551
CciI	TCATGA	2 cut(s)	139, 876
CfoI	GCGC	3 cut(s)	306, 587, 769
Cfr13I	GGNCC	1 cut(s)	1101
CseI	GACGC	2 cut(s)	361, 720
Csp6I	GTAC	2 cut(s)	1001, 1068
CviAII	CATG	6 cut(s)	140, 385, 523, 541, 740, 877
CviQI	GTAC	2 cut(s)	1001, 1068
DdeI	CTNAG	3 cut(s)	312, 1064, 1071
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
DriI	GACNNNNNGTC	1 cut(s)	700
Eam1105I	GACNNNNNGTC	1 cut(s)	700
EciI	GGCGGA	3 cut(s)	62, 82, 398
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	423, 1165
Eco24I	GRGCYC	2 cut(s)	288, 400
Eco31I	GGTCTC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	286
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	1101
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	696, 995
EcoT14I	CCWWGG	2 cut(s)	423, 1165
EcoT38I	GRGCYC	2 cut(s)	288, 400
ErhI	CCWWGG	2 cut(s)	423, 1165
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	6 cut(s)	143, 388, 526, 544, 743, 880
FaqI	GGGAC	1 cut(s)	883
FatI	CATG	6 cut(s)	139, 384, 522, 540, 739, 876
FauI	CCCGC	2 cut(s)	221, 387
Fnu4HI	GCNGC	4 cut(s)	356, 534, 537, 1293
FokI	GGATG	4 cut(s)	830, 877, 1088, 1207
FriOI	GRGCYC	2 cut(s)	288, 400
Fsp4HI	GCNGC	4 cut(s)	356, 534, 537, 1293
FspBI	CTAG	3 cut(s)	1019, 1091, 1145
GlaI	GCGC	3 cut(s)	305, 586, 768
GluI	GCNGC	4 cut(s)	356, 534, 537, 1293
GsaI	CCCAGC	1 cut(s)	1108
GsuI	CTGGAG	3 cut(s)	227, 422, 815
HaeIII	GGCC	4 cut(s)	533, 614, 1062, 1102
HapII	CCGG	5 cut(s)	266, 321, 333, 412, 554
HgaI	GACGC	2 cut(s)	361, 720
HhaI	GCGC	3 cut(s)	306, 587, 769
Hin1I	GRCGYC	2 cut(s)	353, 712
Hin1II	CATG	6 cut(s)	143, 388, 526, 544, 743, 880
Hin6I	GCGC	3 cut(s)	304, 585, 767
HinP1I	GCGC	3 cut(s)	304, 585, 767
HinfI	GANTC	5 cut(s)	338, 468, 736, 954, 1213
HpaII	CCGG	5 cut(s)	266, 321, 333, 412, 554
HphI	GGTGA	5 cut(s)	59, 412, 463, 784, 1051
Hpy166II	GTNNAC	2 cut(s)	186, 1042
Hpy188I	TCNGA	2 cut(s)	467, 610
Hpy188III	TCNNGA	6 cut(s)	140, 266, 401, 794, 877, 1019
Hpy8I	GTNNAC	2 cut(s)	186, 1042
Hpy99I	CGWCG	6 cut(s)	255, 355, 368, 371, 374, 377
HpyAV	CCTTC	4 cut(s)	68, 289, 409, 1045
HpyCH4III	ACNGT	5 cut(s)	206, 251, 595, 874, 908
HpyCH4IV	ACGT	2 cut(s)	124, 519
HpyF3I	CTNAG	3 cut(s)	312, 1064, 1071
HpySE526I	ACGT	2 cut(s)	124, 519
Hsp92I	GRCGYC	2 cut(s)	353, 712
Hsp92II	CATG	6 cut(s)	143, 388, 526, 544, 743, 880
HspAI	GCGC	3 cut(s)	304, 585, 767
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	5 cut(s)	264, 329, 363, 796, 801
LweI	GCATC	1 cut(s)	1185
MaeI	CTAG	3 cut(s)	1019, 1091, 1145
MaeII	ACGT	2 cut(s)	124, 519
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	1 cut(s)	407
MbiI	CCGCTC	3 cut(s)	191, 358, 799
MboI	GATC	1 cut(s)	405
MboII	GAAGA	2 cut(s)	6, 1249
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	3 cut(s)	288, 400, 621
MlyI	GAGTC	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	4 cut(s)	744, 1149, 1206, 1278
MslI	CAYNNNNRTG	2 cut(s)	389, 680
MspI	CCGG	5 cut(s)	266, 321, 333, 412, 554
MspR9I	CCNGG	3 cut(s)	321, 698, 997
MvaI	CCWGG	2 cut(s)	698, 997
MvnI	CGCG	2 cut(s)	363, 585
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	6 cut(s)	143, 388, 526, 544, 743, 880
NlaIV	GGNNCC	2 cut(s)	325, 1103
NmeAIII	GCCGAG	1 cut(s)	745
NmuCI	GTSAC	1 cut(s)	418
PagI	TCATGA	2 cut(s)	139, 876
PasI	CCCWGGG	1 cut(s)	996
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 525
PfeI	GAWTC	4 cut(s)	468, 736, 954, 1213
PflMI	CCANNNNNTGG	1 cut(s)	1111
PkrI	GCNGC	4 cut(s)	357, 535, 538, 1294
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	696, 995
PspEI	GGTNACC	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	1104
PspGI	CCWGG	2 cut(s)	696, 995
PspN4I	GGNNCC	2 cut(s)	325, 1103
PspPI	GGNCC	1 cut(s)	1101
PsuI	RGATCY	1 cut(s)	405
RsaI	GTAC	2 cut(s)	1002, 1069
RsaNI	GTAC	2 cut(s)	1001, 1068
RseI	CAYNNNNRTG	2 cut(s)	389, 680
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	744, 1149, 1206, 1278
SatI	GCNGC	4 cut(s)	356, 534, 537, 1293
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	1101
ScaI	AGTACT	1 cut(s)	1069
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	321, 698, 997
SduI	GDGCHC	3 cut(s)	288, 400, 621
SfaNI	GCATC	1 cut(s)	1185
SfcI	CTRYAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	2 cut(s)	389, 680
SspMI	CTAG	3 cut(s)	1019, 1091, 1145
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	319, 696, 995
StyI	CCWWGG	2 cut(s)	423, 1165
TaaI	ACNGT	5 cut(s)	206, 251, 595, 874, 908
TaiI	ACGT	2 cut(s)	127, 522
TaqI	TCGA	3 cut(s)	282, 528, 734
TaqII	GACCGA	1 cut(s)	518
TatI	WGTACW	1 cut(s)	1067
TauI	GCSGC	4 cut(s)	358, 536, 539, 1295
TfiI	GAWTC	4 cut(s)	468, 736, 954, 1213
Tru1I	TTAA	4 cut(s)	744, 1149, 1206, 1278
Tru9I	TTAA	4 cut(s)	744, 1149, 1206, 1278
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	4 cut(s)	499, 557, 728, 1043
TspGWI	ACGGA	1 cut(s)	506
Van91I	CCANNNNNTGG	1 cut(s)	1111
XagI	CCTNNNNNAGG	1 cut(s)	625
XapI	RAATTY	2 cut(s)	461, 1055
XbaI	TCTAGA	1 cut(s)	1018
XspI	CTAG	3 cut(s)	1019, 1091, 1145
ZrmI	AGTACT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.