Rorug06G0011600
ERF Family

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
1598332 .. 1600835
2504 bp
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UTR
Exon/CDS
Intron
Rorug06G0011600.1

Sequence Viewer

Length: 165 bp
ATGAACAATTGGTGGGAGTTCTCTTGCAAGCAAATTGAATGTTGTCAAACGGGTGTCTTCAGTTGTTTGCCCAGCAAGCATTTCAGCTGGAGCAGAGGTAGTGGAGCCTCATCTGTCTTTCAAAGAGGTTTCAAATCCACAGAAGCAGAATCTGTTTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

54

Amino Acids

6.17

Weight (kDa)

7.67

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 43
AgsI TTSAA 3 cut(s) 38, 122, 133
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
BseYI CCCAGC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 29, 77
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 29, 77
CaiI CAGNNNCTG 1 cut(s) 152
CviJI RGCY 2 cut(s) 87, 107
CviKI_1 RGCY 2 cut(s) 87, 107
Eco57I CTGAAG 1 cut(s) 43
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 109
HinfI GANTC 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 90, 104
LpnPI CCDG 2 cut(s) 73, 85
MboII GAAGA 1 cut(s) 49
MfeI CAATTG 1 cut(s) 7
MluCI AATT 2 cut(s) 7, 33
MnlI CCTC 3 cut(s) 89, 118, 119
MspA1I CMGCKG 1 cut(s) 87
MunI CAATTG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 87
SetI ASST 3 cut(s) 89, 100, 130
SgeI CNNG 6 cut(s) 36, 40, 63, 84, 88, 100
Sse9I AATT 2 cut(s) 7, 33
TasI AATT 2 cut(s) 7, 33
TfiI GAWTC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.