Rmu_sc0006505.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006505.1
OG0031371
Physical Location & Seq
Reverse (-)
2 .. 585
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006505.1_g000001.1.cds

Sequence Viewer

Length: 584 bp
atggaagacctaccaaggcaagacagcccacgagtcctgaaggtcctggaagctctaaaacaagcctcccaggagctccaaacccgcccgagtcccgactcggccgagtccaactcgtccgccattaacgccctcctcgagctcgagaccgagtccgactcgctcctctcccgagacccacatctctccactctctcccaacacctcgccaccctcaaaaccctcgtcgcttccctccggaaacccaacgcccaccacagcataatgtccttcctcactcgccgcgcctccgctcagtcgctgagtcgactcgccggttcgatcgagtcggaaatccaggcctggatcgaccgcgagagcctcgagtccctaacgagagctctgaaacagaaggacccagttggcaacgaggacgagttgatccagctactggctcagttcgaggaccgagtctcgcaaggcttcaaccgcgagttgcaggatttggtgttgaagtccaaagtgttgagcttgctcgaatctgttctctgcgattcgaatacctcaaagcgagtcagggaacactgcgctttcgccatagctgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.65

Weight (kDa)

5.59

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031371)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006505.1_g000001 Rmu_sc0019738.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 307
AccII CGCG 3 cut(s) 285, 354, 471
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 6 cut(s) 85, 120, 283, 291, 352, 469
AclWI GGATC 2 cut(s) 353, 415
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 2 cut(s) 466, 493
AjnI CCWGG 4 cut(s) 45, 69, 336, 341
AluBI AGCT 7 cut(s) 53, 76, 142, 380, 427, 510, 581
AluI AGCT 7 cut(s) 53, 76, 142, 380, 427, 510, 581
Alw21I GWGCWC 3 cut(s) 78, 144, 382
Alw26I GTCTC 3 cut(s) 140, 168, 457
AlwI GGATC 2 cut(s) 353, 415
AlwNI CAGNNNCTG 2 cut(s) 301, 430
Ama87I CYCGRG 5 cut(s) 88, 137, 143, 171, 362
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 2 cut(s) 102, 339
ApeKI GCWGC 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 287, 569
AspS9I GGNCC 3 cut(s) 43, 394, 445
AsuII TTCGAA 1 cut(s) 536
AvaI CYCGRG 5 cut(s) 88, 137, 143, 171, 362
AvaII GGWCC 3 cut(s) 43, 394, 445
BanII GRGCYC 3 cut(s) 78, 144, 382
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 3 cut(s) 78, 144, 382
BbvI GCAGC 1 cut(s) 568
BciT130I CCWGG 4 cut(s) 47, 71, 338, 343
BcoDI GTCTC 3 cut(s) 140, 168, 457
BisI GCNGC 2 cut(s) 283, 582
BlsI GCNGC 2 cut(s) 284, 583
Bme1390I CCNGG 4 cut(s) 47, 71, 338, 343
Bme18I GGWCC 3 cut(s) 43, 394, 445
BmeT110I CYCGRG 5 cut(s) 88, 137, 143, 171, 362
BmgT120I GGNCC 3 cut(s) 43, 394, 445
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 4 cut(s) 47, 71, 338, 343
BmrI ACTGGG 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 4 cut(s) 98, 130, 143, 175
Bpu14I TTCGAA 1 cut(s) 536
BsaI GGTCTC 2 cut(s) 140, 168
BsaJI CCNNGG 2 cut(s) 14, 69
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 398, 435
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 4 cut(s) 47, 71, 338, 343
BseDI CCNNGG 2 cut(s) 14, 69
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 293, 308, 449
BseNI ACTGG 2 cut(s) 398, 435
BseRI GAGGAG 2 cut(s) 125, 155
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 568
Bsh1236I CGCG 3 cut(s) 285, 354, 471
Bsh1285I CGRYCG 3 cut(s) 105, 324, 352
BshFI GGCC 2 cut(s) 104, 341
BsiEI CGRYCG 3 cut(s) 105, 324, 352
BsiHKAI GWGCWC 3 cut(s) 78, 144, 382
BsiHKCI CYCGRG 5 cut(s) 88, 137, 143, 171, 362
BsiSI CCGG 2 cut(s) 238, 315
BslFI GGGAC 2 cut(s) 78, 352
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 3 cut(s) 140, 168, 457
BsmFI GGGAC 2 cut(s) 78, 352
BsnI GGCC 2 cut(s) 104, 341
Bso31I GGTCTC 2 cut(s) 140, 168
BsoBI CYCGRG 5 cut(s) 88, 137, 143, 171, 362
Bsp119I TTCGAA 1 cut(s) 536
Bsp1286I GDGCHC 3 cut(s) 78, 144, 382
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 321, 345, 420
BspACI CCGC 6 cut(s) 85, 120, 283, 291, 352, 469
BspANI GGCC 2 cut(s) 104, 341
BspCNI CTCAG 3 cut(s) 294, 307, 448
BspEI TCCGGA 1 cut(s) 237
BspFNI CGCG 3 cut(s) 285, 354, 471
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 2 cut(s) 353, 415
BspT104I TTCGAA 1 cut(s) 536
BspTNI GGTCTC 2 cut(s) 140, 168
BsrBI CCGCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 2 cut(s) 398, 435
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 14, 69
BssMI GATC 3 cut(s) 321, 345, 420
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 4 cut(s) 47, 71, 338, 343
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 3 cut(s) 294, 302, 435
BstFNI CGCG 3 cut(s) 285, 354, 471
BstHHI GCGC 2 cut(s) 287, 569
BstKTI GATC 3 cut(s) 324, 348, 423
BstMAI GTCTC 3 cut(s) 140, 168, 457
BstMBI GATC 3 cut(s) 321, 345, 420
BstMCI CGRYCG 3 cut(s) 105, 324, 352
BstMWI GCNNNNNNNGC 3 cut(s) 128, 468, 581
BstNI CCWGG 4 cut(s) 47, 71, 338, 343
BstSCI CCNGG 4 cut(s) 45, 69, 336, 341
BstUI CGCG 3 cut(s) 285, 354, 471
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 1 cut(s) 12
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 2 cut(s) 104, 341
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 512
CaiI CAGNNNCTG 2 cut(s) 301, 430
CfoI GCGC 2 cut(s) 287, 569
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 3 cut(s) 43, 394, 445
DdeI CTNAG 3 cut(s) 294, 302, 435
DpnI GATC 3 cut(s) 323, 347, 422
DpnII GATC 3 cut(s) 321, 345, 420
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 3 cut(s) 76, 142, 380
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 341
Eco24I GRGCYC 3 cut(s) 78, 144, 382
Eco31I GGTCTC 2 cut(s) 140, 168
Eco47I GGWCC 3 cut(s) 43, 394, 445
Eco52I CGGCCG 1 cut(s) 102
Eco53kI GAGCTC 3 cut(s) 76, 142, 380
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 5 cut(s) 88, 137, 143, 171, 362
EcoICRI GAGCTC 3 cut(s) 76, 142, 380
EcoO109I RGGNCCY 2 cut(s) 43, 394
EcoRII CCWGG 4 cut(s) 45, 69, 336, 341
EcoT14I CCWWGG 1 cut(s) 14
EcoT38I GRGCYC 3 cut(s) 78, 144, 382
ErhI CCWWGG 1 cut(s) 14
FaiI YATR 2 cut(s) 263, 578
FaqI GGGAC 2 cut(s) 78, 352
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 283, 582
FriOI GRGCYC 3 cut(s) 78, 144, 382
Fsp4HI GCNGC 2 cut(s) 283, 582
GlaI GCGC 2 cut(s) 286, 568
GluI GCNGC 2 cut(s) 283, 582
HaeIII GGCC 2 cut(s) 104, 341
HapII CCGG 2 cut(s) 238, 315
HhaI GCGC 2 cut(s) 287, 569
Hin6I GCGC 2 cut(s) 285, 567
HinP1I GCGC 2 cut(s) 285, 567
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HpaII CCGG 2 cut(s) 238, 315
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 157, 331, 384
Hpy188III TCNNGA 5 cut(s) 37, 95, 145, 171, 238
Hpy8I GTNNAC 1 cut(s) 308
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 34, 280, 385
HpyCH4V TGCA 1 cut(s) 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 468, 581
HpyF3I CTNAG 3 cut(s) 294, 302, 435
HspAI GCGC 2 cut(s) 285, 567
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 321, 345, 420
LmnI GCTCC 3 cut(s) 73, 81, 168
Lsp1109I GCAGC 1 cut(s) 568
MalI GATC 3 cut(s) 323, 347, 422
MbiI CCGCTC 1 cut(s) 293
MboI GATC 3 cut(s) 321, 345, 420
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 3 cut(s) 78, 144, 382
MmeI TCCRAC 3 cut(s) 135, 180, 309
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 238, 315
MspR9I CCNGG 4 cut(s) 47, 71, 338, 343
MvaI CCWGG 4 cut(s) 47, 71, 338, 343
MvnI CGCG 3 cut(s) 285, 354, 471
MwoI GCNNNNNNNGC 3 cut(s) 128, 468, 581
NdeII GATC 3 cut(s) 321, 345, 420
NlaIV GGNNCC 1 cut(s) 396
NmeAIII GCCGAG 2 cut(s) 80, 130
NspV TTCGAA 1 cut(s) 536
PaeR7I CTCGAG 3 cut(s) 137, 143, 362
PceI AGGCCT 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 518, 533
PflFI GACNNNGTC 2 cut(s) 151, 449
PflMI CCANNNNNTGG 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 284, 583
Ple19I CGATCG 1 cut(s) 324
PpuMI RGGWCCY 2 cut(s) 43, 394
Psp124BI GAGCTC 3 cut(s) 78, 144, 382
Psp5II RGGWCCY 2 cut(s) 43, 394
Psp6I CCWGG 4 cut(s) 45, 69, 336, 341
PspGI CCWGG 4 cut(s) 45, 69, 336, 341
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 3 cut(s) 43, 394, 445
PspPPI RGGWCCY 2 cut(s) 43, 394
PspXI VCTCGAGB 2 cut(s) 137, 362
PstNI CAGNNNCTG 2 cut(s) 301, 430
PsyI GACNNNGTC 2 cut(s) 151, 449
PvuI CGATCG 1 cut(s) 324
SacI GAGCTC 3 cut(s) 78, 144, 382
SalI GTCGAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 283, 582
Sau3AI GATC 3 cut(s) 321, 345, 420
Sau96I GGNCC 3 cut(s) 43, 394, 445
ScrFI CCNGG 4 cut(s) 47, 71, 338, 343
SduI GDGCHC 3 cut(s) 78, 144, 382
Sfr274I CTCGAG 3 cut(s) 137, 143, 362
SfuI TTCGAA 1 cut(s) 536
SinI GGWCC 3 cut(s) 43, 394, 445
SlaI CTCGAG 3 cut(s) 137, 143, 362
SmlI CTYRAG 3 cut(s) 137, 143, 362
SmoI CTYRAG 3 cut(s) 137, 143, 362
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 6 cut(s) 85, 120, 283, 291, 352, 469
SstI GAGCTC 3 cut(s) 78, 144, 382
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 4 cut(s) 45, 69, 336, 341
StyI CCWWGG 1 cut(s) 14
TaqII GACCGA 2 cut(s) 164, 462
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 2 cut(s) 518, 533
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 569
TseI GCWGC 1 cut(s) 581
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 2 cut(s) 151, 449
Van91I CCANNNNNTGG 1 cut(s) 430
VpaK11BI GGWCC 3 cut(s) 43, 394, 445
XhoI CTCGAG 3 cut(s) 137, 143, 362
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.