Rmu_sc0019738.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019738.1
OG0031371
Physical Location & Seq
Reverse (-)
2 .. 591
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019738.1_g000001.1.cds

Sequence Viewer

Length: 590 bp
atggacatggaagacctaccaaggcaagacagcccacgagtcctgaaggtcctggaagctctaaaacaagcctcccaggagctccaaacccacccgagtcccgactcggccgagtccaactcgtccgccattaacgccctcctcgagctcgagaccgagtccgactcgctcctctcccgagacccacatctctccactctctcccaacacctcgccaccctcaaaaccctcgtcgcttccctccggaaacccaacgcccaccacagcataatgtccttcctcactcgccgcgcctccgctcagtcgctgagtcgactcgccggttcgatcgagtcggaaatccaggcctggatcgaccgcgagagcctcgagtccctaacgagagctctgaaacagaaggacccagttggcaacgaggacgagttgatccagctactggctcagttcgaggaccgagtctcgcaaggcttcaaccgcgagttgcaagatttggtgttgaagtccaaagtattgagcttgctcgaatctgttctctgcgattcgaatacctcaaagcgagtcagggaacactgcgctttcgccatagctgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.88

Weight (kDa)

5.4

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031371)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006505.1_g000001 Rmu_sc0019738.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 313
AccII CGCG 3 cut(s) 291, 360, 477
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 5 cut(s) 126, 289, 297, 358, 475
AclWI GGATC 2 cut(s) 359, 421
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 2 cut(s) 472, 499
AjnI CCWGG 4 cut(s) 51, 75, 342, 347
AluBI AGCT 7 cut(s) 59, 82, 148, 386, 433, 516, 587
AluI AGCT 7 cut(s) 59, 82, 148, 386, 433, 516, 587
Alw21I GWGCWC 3 cut(s) 84, 150, 388
Alw26I GTCTC 3 cut(s) 146, 174, 463
AlwI GGATC 2 cut(s) 359, 421
AlwNI CAGNNNCTG 2 cut(s) 307, 436
Ama87I CYCGRG 5 cut(s) 94, 143, 149, 177, 368
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 2 cut(s) 108, 345
ApeKI GCWGC 1 cut(s) 587
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 293, 575
AspS9I GGNCC 3 cut(s) 49, 400, 451
AsuII TTCGAA 1 cut(s) 542
AvaI CYCGRG 5 cut(s) 94, 143, 149, 177, 368
AvaII GGWCC 3 cut(s) 49, 400, 451
BanII GRGCYC 3 cut(s) 84, 150, 388
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 84, 150, 388
BbvI GCAGC 1 cut(s) 574
BciT130I CCWGG 4 cut(s) 53, 77, 344, 349
BcoDI GTCTC 3 cut(s) 146, 174, 463
BisI GCNGC 2 cut(s) 289, 588
BlsI GCNGC 2 cut(s) 290, 589
Bme1390I CCNGG 4 cut(s) 53, 77, 344, 349
Bme18I GGWCC 3 cut(s) 49, 400, 451
BmeT110I CYCGRG 5 cut(s) 94, 143, 149, 177, 368
BmgT120I GGNCC 3 cut(s) 49, 400, 451
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 4 cut(s) 53, 77, 344, 349
BmrI ACTGGG 1 cut(s) 398
BmuI ACTGGG 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 4 cut(s) 104, 136, 149, 181
Bpu14I TTCGAA 1 cut(s) 542
BsaI GGTCTC 2 cut(s) 146, 174
BsaJI CCNNGG 2 cut(s) 20, 75
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 404, 441
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 4 cut(s) 53, 77, 344, 349
BseDI CCNNGG 2 cut(s) 20, 75
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 3 cut(s) 299, 314, 455
BseNI ACTGG 2 cut(s) 404, 441
BseRI GAGGAG 2 cut(s) 131, 161
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 574
Bsh1236I CGCG 3 cut(s) 291, 360, 477
Bsh1285I CGRYCG 3 cut(s) 111, 330, 358
BshFI GGCC 2 cut(s) 110, 347
BsiEI CGRYCG 3 cut(s) 111, 330, 358
BsiHKAI GWGCWC 3 cut(s) 84, 150, 388
BsiHKCI CYCGRG 5 cut(s) 94, 143, 149, 177, 368
BsiSI CCGG 2 cut(s) 244, 321
BslFI GGGAC 2 cut(s) 84, 358
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 3 cut(s) 146, 174, 463
BsmFI GGGAC 2 cut(s) 84, 358
BsnI GGCC 2 cut(s) 110, 347
Bso31I GGTCTC 2 cut(s) 146, 174
BsoBI CYCGRG 5 cut(s) 94, 143, 149, 177, 368
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 3 cut(s) 84, 150, 388
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 327, 351, 426
BspACI CCGC 5 cut(s) 126, 289, 297, 358, 475
BspANI GGCC 2 cut(s) 110, 347
BspCNI CTCAG 3 cut(s) 300, 313, 454
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 3 cut(s) 291, 360, 477
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 359, 421
BspT104I TTCGAA 1 cut(s) 542
BspTNI GGTCTC 2 cut(s) 146, 174
BsrBI CCGCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 2 cut(s) 404, 441
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 20, 75
BssMI GATC 3 cut(s) 327, 351, 426
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 4 cut(s) 53, 77, 344, 349
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 3 cut(s) 300, 308, 441
BstFNI CGCG 3 cut(s) 291, 360, 477
BstHHI GCGC 2 cut(s) 293, 575
BstKTI GATC 3 cut(s) 330, 354, 429
BstMAI GTCTC 3 cut(s) 146, 174, 463
BstMBI GATC 3 cut(s) 327, 351, 426
BstMCI CGRYCG 3 cut(s) 111, 330, 358
BstMWI GCNNNNNNNGC 3 cut(s) 134, 474, 587
BstNI CCWGG 4 cut(s) 53, 77, 344, 349
BstSCI CCNGG 4 cut(s) 51, 75, 342, 347
BstUI CGCG 3 cut(s) 291, 360, 477
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 110, 347
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 2 cut(s) 307, 436
CfoI GCGC 2 cut(s) 293, 575
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 49, 400, 451
CviAII CATG 1 cut(s) 7
DdeI CTNAG 3 cut(s) 300, 308, 441
DpnI GATC 3 cut(s) 329, 353, 428
DpnII GATC 3 cut(s) 327, 351, 426
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 3 cut(s) 82, 148, 386
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 347
Eco24I GRGCYC 3 cut(s) 84, 150, 388
Eco31I GGTCTC 2 cut(s) 146, 174
Eco47I GGWCC 3 cut(s) 49, 400, 451
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 3 cut(s) 82, 148, 386
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 5 cut(s) 94, 143, 149, 177, 368
EcoICRI GAGCTC 3 cut(s) 82, 148, 386
EcoO109I RGGNCCY 2 cut(s) 49, 400
EcoRII CCWGG 4 cut(s) 51, 75, 342, 347
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 3 cut(s) 84, 150, 388
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 269, 584
FaqI GGGAC 2 cut(s) 84, 358
FatI CATG 1 cut(s) 6
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 289, 588
FriOI GRGCYC 3 cut(s) 84, 150, 388
Fsp4HI GCNGC 2 cut(s) 289, 588
GlaI GCGC 2 cut(s) 292, 574
GluI GCNGC 2 cut(s) 289, 588
HaeIII GGCC 2 cut(s) 110, 347
HapII CCGG 2 cut(s) 244, 321
HhaI GCGC 2 cut(s) 293, 575
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 2 cut(s) 291, 573
HinP1I GCGC 2 cut(s) 291, 573
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HpaII CCGG 2 cut(s) 244, 321
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 163, 337, 390
Hpy188III TCNNGA 5 cut(s) 43, 101, 151, 177, 244
Hpy8I GTNNAC 1 cut(s) 314
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 40, 286, 391
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 474, 587
HpyF3I CTNAG 3 cut(s) 300, 308, 441
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 2 cut(s) 291, 573
Kpn2I TCCGGA 1 cut(s) 243
Kzo9I GATC 3 cut(s) 327, 351, 426
LmnI GCTCC 3 cut(s) 79, 87, 174
Lsp1109I GCAGC 1 cut(s) 574
MalI GATC 3 cut(s) 329, 353, 428
MbiI CCGCTC 1 cut(s) 299
MboI GATC 3 cut(s) 327, 351, 426
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 3 cut(s) 84, 150, 388
MmeI TCCRAC 3 cut(s) 141, 186, 315
MroI TCCGGA 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 1 cut(s) 132
MspI CCGG 2 cut(s) 244, 321
MspR9I CCNGG 4 cut(s) 53, 77, 344, 349
MvaI CCWGG 4 cut(s) 53, 77, 344, 349
MvnI CGCG 3 cut(s) 291, 360, 477
MwoI GCNNNNNNNGC 3 cut(s) 134, 474, 587
NdeII GATC 3 cut(s) 327, 351, 426
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 402
NmeAIII GCCGAG 2 cut(s) 86, 136
NspV TTCGAA 1 cut(s) 542
PaeR7I CTCGAG 3 cut(s) 143, 149, 368
PceI AGGCCT 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 524, 539
PflFI GACNNNGTC 2 cut(s) 157, 455
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 2 cut(s) 290, 589
Ple19I CGATCG 1 cut(s) 330
PpuMI RGGWCCY 2 cut(s) 49, 400
Psp124BI GAGCTC 3 cut(s) 84, 150, 388
Psp5II RGGWCCY 2 cut(s) 49, 400
Psp6I CCWGG 4 cut(s) 51, 75, 342, 347
PspGI CCWGG 4 cut(s) 51, 75, 342, 347
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 3 cut(s) 49, 400, 451
PspPPI RGGWCCY 2 cut(s) 49, 400
PspXI VCTCGAGB 2 cut(s) 143, 368
PstNI CAGNNNCTG 2 cut(s) 307, 436
PsyI GACNNNGTC 2 cut(s) 157, 455
PvuI CGATCG 1 cut(s) 330
SacI GAGCTC 3 cut(s) 84, 150, 388
SalI GTCGAC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 289, 588
Sau3AI GATC 3 cut(s) 327, 351, 426
Sau96I GGNCC 3 cut(s) 49, 400, 451
ScrFI CCNGG 4 cut(s) 53, 77, 344, 349
SduI GDGCHC 3 cut(s) 84, 150, 388
Sfr274I CTCGAG 3 cut(s) 143, 149, 368
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 3 cut(s) 49, 400, 451
SlaI CTCGAG 3 cut(s) 143, 149, 368
SmlI CTYRAG 3 cut(s) 143, 149, 368
SmoI CTYRAG 3 cut(s) 143, 149, 368
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 5 cut(s) 126, 289, 297, 358, 475
SstI GAGCTC 3 cut(s) 84, 150, 388
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 4 cut(s) 51, 75, 342, 347
StyI CCWWGG 1 cut(s) 20
TaqII GACCGA 2 cut(s) 170, 468
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 2 cut(s) 524, 539
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 575
TseI GCWGC 1 cut(s) 587
TspRI CASTG 1 cut(s) 575
Tth111I GACNNNGTC 2 cut(s) 157, 455
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 3 cut(s) 49, 400, 451
XhoI CTCGAG 3 cut(s) 143, 149, 368
XmiI GTMKAC 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.