Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006512.1

Orthogroup ID

OG0022210

Physical Location & Seq

Genomic Coordinates Forward (+)

31655 .. 32817

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggatagggaagaacgaagcgaatgggaggagcagtgccgtctgtacgaggcctacaacgagctccacggcctcgcccaagccttcgacactcccttcgacgctcccgccgtcctcgtcgtcggccaccagacagatggcaagagcgcattggtcgaagccctcatgggcttccagttcaaccacgtcggcggcggcaccaagacccgccgccccatcactctccacatgaagtacgacccggactcccactcccctctctgccgcctcgtctccgactccgacccggcccaggcccaccccaagtccctccaggacatccaggcttacattgaggccgagaacatgaggctcgagaaggagccttgtctcttctccgccaaggagatcattattagagtggagtacaagtactgccccaacctcaccattatcgacactcctggcctcattgctcctgctcccggccccaaaaaccgagcattgcaggttcaagctcgtgcggtggaagcactcgtgcgagctaaaatgcagcataaagagctcattatattgtgtcttgaagattgcagtgactggagtaatgcaactacgcggagggtagtaatgcaaatcgatcctgagctctcgaggactgtaattgtttcaaccaagctcgatacgaaaataccccagtttgcacggtcatcagacgtggaagtgtttctgtcacctcccacatgtatgctcgatgggtgcatcttgggagactcgcctttctttacttctgtgccgtctggaagagttggttttggacatgattcggtttacagatctaatgatgagtttaaacaggtgttctcgcttatcttgtgttcattttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

288

Amino Acids

32.25

Weight (kDa)

5.42

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	38 - 219	1e-31	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022210)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02800
rosa_multiflora	Rmu_sc0006512.1_g000005 Rmu_sc0016873.1_g000001 Rmu_sc0016874.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	595
AciI	CCGC	9 cut(s)	108, 192, 195, 208, 211, 265, 378, 503, 595
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	4 cut(s)	47, 236, 407, 413
AfiI	CCNNNNNNNGG	2 cut(s)	292, 464
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	181, 494, 563, 648
AjiI	CACGTC	2 cut(s)	187, 694
AjnI	CCWGG	4 cut(s)	291, 312, 321, 442
AluBI	AGCT	6 cut(s)	64, 497, 524, 544, 625, 655
AluI	AGCT	6 cut(s)	64, 497, 524, 544, 625, 655
Alw21I	GWGCWC	3 cut(s)	66, 546, 627
Alw26I	GTCTC	3 cut(s)	277, 374, 741
AlwI	GGATC	1 cut(s)	611
AlwNI	CAGNNNCTG	1 cut(s)	576
Ama87I	CYCGRG	2 cut(s)	353, 628
AoxI	GGCC	8 cut(s)	51, 70, 124, 288, 294, 336, 445, 466
ApeKI	GCWGC	1 cut(s)	532
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	289, 295, 467
AsuC2I	CCSGG	3 cut(s)	242, 287, 465
AsuHPI	GGTGA	2 cut(s)	418, 702
AvaI	CYCGRG	2 cut(s)	353, 628
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	66, 546, 627
BauI	CACGAG	2 cut(s)	498, 515
Bbv12I	GWGCWC	3 cut(s)	66, 546, 627
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	3 cut(s)	131, 224, 725
BceAI	ACGGC	4 cut(s)	24, 85, 95, 757
BciT130I	CCWGG	4 cut(s)	293, 314, 323, 444
BcnI	CCSGG	3 cut(s)	242, 287, 465
BcoDI	GTCTC	3 cut(s)	277, 374, 741
BfuAI	ACCTGC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	812
BisI	GCNGC	5 cut(s)	193, 196, 211, 265, 533
BlsI	GCNGC	5 cut(s)	194, 197, 212, 266, 534
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
BmeT110I	CYCGRG	2 cut(s)	353, 628
BmgBI	CACGTC	2 cut(s)	187, 694
BmgT120I	GGNCC	3 cut(s)	289, 295, 467
BmiI	GGNNCC	3 cut(s)	199, 363, 469
BmrFI	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	667
BpmI	CTGGAG	2 cut(s)	296, 598
Bpu10I	CCTNAGC	1 cut(s)	621
BpuMI	CCSGG	3 cut(s)	242, 287, 465
Bsa29I	ATCGAT	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	67, 291, 381
BsaXI	ACNNNNNCTCC	8 cut(s)	20, 50, 230, 236, 260, 266, 395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 464
Bse1I	ACTGG	3 cut(s)	175, 581, 673
Bse3DI	GCAATG	2 cut(s)	450, 482
BseBI	CCWGG	4 cut(s)	293, 314, 323, 444
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	67, 291, 381
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	292, 464
BseMI	GCAATG	2 cut(s)	450, 482
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	175, 581, 673
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	595
BshFI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	3 cut(s)	66, 546, 627
BsiHKCI	CYCGRG	2 cut(s)	353, 628
BsiSI	CCGG	3 cut(s)	242, 287, 465
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	292, 464
BsmAI	GTCTC	3 cut(s)	277, 374, 741
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BsoBI	CYCGRG	2 cut(s)	353, 628
Bsp1286I	GDGCHC	3 cut(s)	66, 546, 627
Bsp143I	GATC	3 cut(s)	387, 616, 812
BspACI	CCGC	9 cut(s)	108, 192, 195, 208, 211, 265, 378, 503, 595
BspANI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	595
BspLI	GGNNCC	3 cut(s)	199, 363, 469
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	450, 482
BsrI	ACTGG	3 cut(s)	175, 581, 673
BssECI	CCNNGG	3 cut(s)	67, 291, 381
BssMI	GATC	3 cut(s)	387, 616, 812
BssSI	CACGAG	2 cut(s)	498, 515
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	2 cut(s)	498, 515
Bst2UI	CCWGG	4 cut(s)	293, 314, 323, 444
Bst4CI	ACNGT	2 cut(s)	637, 684
Bst6I	CTCTTC	2 cut(s)	377, 775
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	390, 619, 815
BstMAI	GTCTC	3 cut(s)	277, 374, 741
BstMBI	GATC	3 cut(s)	387, 616, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 541
BstNI	CCWGG	4 cut(s)	293, 314, 323, 444
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	7 cut(s)	240, 285, 291, 312, 321, 442, 463
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BsuTUI	ATCGAT	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	2 cut(s)	187, 694
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	2 cut(s)	41, 577
BtsIMutI	CAGTG	2 cut(s)	41, 577
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	576
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	289, 295, 467
ClaI	ATCGAT	1 cut(s)	615
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	46, 235, 406, 412
CviAII	CATG	5 cut(s)	166, 229, 346, 720, 797
CviQI	GTAC	4 cut(s)	46, 235, 406, 412
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	3 cut(s)	389, 618, 814
DpnII	GATC	3 cut(s)	387, 616, 812
DraI	TTTAAA	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	377, 775
EarI	CTCTTC	2 cut(s)	377, 775
EciI	GGCGGA	1 cut(s)	367
Ecl136II	GAGCTC	3 cut(s)	64, 544, 625
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	3 cut(s)	66, 546, 627
Eco53kI	GAGCTC	3 cut(s)	64, 544, 625
Eco88I	CYCGRG	2 cut(s)	353, 628
EcoICRI	GAGCTC	3 cut(s)	64, 544, 625
EcoRII	CCWGG	4 cut(s)	291, 312, 321, 442
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	3 cut(s)	66, 546, 627
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	5 cut(s)	169, 232, 349, 723, 800
FaiI	YATR	8 cut(s)	167, 230, 347, 537, 551, 721, 725, 798
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	5 cut(s)	165, 228, 345, 719, 796
FauI	CCCGC	2 cut(s)	115, 215
Fnu4HI	GCNGC	5 cut(s)	193, 196, 211, 265, 533
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	3 cut(s)	66, 546, 627
Fsp4HI	GCNGC	5 cut(s)	193, 196, 211, 265, 533
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	193, 196, 211, 265, 533
GsuI	CTGGAG	2 cut(s)	296, 598
HaeIII	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
HapII	CCGG	3 cut(s)	242, 287, 465
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	169, 232, 349, 723, 800
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	245, 278, 749, 800
HpaII	CCGG	3 cut(s)	242, 287, 465
HphI	GGTGA	2 cut(s)	418, 702
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	3 cut(s)	277, 283, 691
Hpy188III	TCNNGA	5 cut(s)	355, 560, 620, 628, 777
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	4 cut(s)	104, 122, 125, 191
HpyAV	CCTTC	3 cut(s)	94, 106, 352
HpyCH4III	ACNGT	2 cut(s)	637, 684
HpyCH4IV	ACGT	2 cut(s)	186, 693
HpyCH4V	TGCA	7 cut(s)	487, 532, 570, 587, 610, 680, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 541
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	2 cut(s)	186, 693
Hsp92II	CATG	5 cut(s)	169, 232, 349, 723, 800
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	387, 616, 812
LmnI	GCTCC	6 cut(s)	31, 69, 109, 361, 460, 466
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	747
MaeII	ACGT	2 cut(s)	186, 693
MaeIII	GTNAC	2 cut(s)	572, 708
MalI	GATC	3 cut(s)	389, 618, 814
MboI	GATC	3 cut(s)	387, 616, 812
MboII	GAAGA	4 cut(s)	23, 364, 575, 792
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	3 cut(s)	66, 546, 627
MluCI	AATT	1 cut(s)	639
MlyI	GAGTC	3 cut(s)	239, 272, 743
MmeI	TCCRAC	2 cut(s)	300, 306
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	1 cut(s)	828
MslI	CAYNNNNRTG	1 cut(s)	722
MspI	CCGG	3 cut(s)	242, 287, 465
MspR9I	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
MssI	GTTTAAAC	1 cut(s)	829
MvaI	CCWGG	4 cut(s)	293, 314, 323, 444
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	2 cut(s)	509, 541
NciI	CCSGG	3 cut(s)	242, 287, 465
NdeII	GATC	3 cut(s)	387, 616, 812
NlaIII	CATG	5 cut(s)	169, 232, 349, 723, 800
NlaIV	GGNNCC	3 cut(s)	199, 363, 469
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	2 cut(s)	572, 708
NspI	RCATGY	1 cut(s)	723
PaeR7I	CTCGAG	2 cut(s)	353, 628
PceI	AGGCCT	1 cut(s)	53
PciI	ACATGT	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	194, 197, 212, 266, 534
PleI	GAGTC	3 cut(s)	239, 272, 743
PmeI	GTTTAAAC	1 cut(s)	829
PpsI	GAGTC	3 cut(s)	239, 272, 743
PscI	ACATGT	1 cut(s)	719
Psp124BI	GAGCTC	3 cut(s)	66, 546, 627
Psp6I	CCWGG	4 cut(s)	291, 312, 321, 442
PspGI	CCWGG	4 cut(s)	291, 312, 321, 442
PspN4I	GGNNCC	3 cut(s)	199, 363, 469
PspPI	GGNCC	3 cut(s)	289, 295, 467
PstNI	CAGNNNCTG	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	812
RsaI	GTAC	4 cut(s)	47, 236, 407, 413
RsaNI	GTAC	4 cut(s)	46, 235, 406, 412
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	3 cut(s)	66, 546, 627
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	5 cut(s)	193, 196, 211, 265, 533
Sau3AI	GATC	3 cut(s)	387, 616, 812
Sau96I	GGNCC	3 cut(s)	289, 295, 467
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	3 cut(s)	239, 272, 743
ScrFI	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
SduI	GDGCHC	3 cut(s)	66, 546, 627
SfaNI	GCATC	1 cut(s)	747
Sfr274I	CTCGAG	2 cut(s)	353, 628
SlaI	CTCGAG	2 cut(s)	353, 628
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	353, 628
SmoI	CTYRAG	2 cut(s)	353, 628
Sse9I	AATT	1 cut(s)	639
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	9 cut(s)	108, 192, 195, 208, 211, 265, 378, 503, 595
SstI	GAGCTC	3 cut(s)	66, 546, 627
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	7 cut(s)	240, 285, 291, 312, 321, 442, 463
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	637, 684
TaiI	ACGT	2 cut(s)	189, 696
TaqI	TCGA	9 cut(s)	87, 99, 156, 354, 435, 615, 629, 657, 729
TasI	AATT	1 cut(s)	639
TatI	WGTACW	2 cut(s)	405, 411
TauI	GCSGC	4 cut(s)	195, 198, 213, 267
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	2 cut(s)	41, 577
TseFI	GTSAC	2 cut(s)	572, 708
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	2 cut(s)	572, 708
TspDTI	ATGAA	2 cut(s)	245, 846
TspRI	CASTG	2 cut(s)	41, 577
XceI	RCATGY	1 cut(s)	723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XhoI	CTCGAG	2 cut(s)	353, 628
XmnI	GAANNNNTTC	1 cut(s)	702
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.