Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006567.1

Orthogroup ID

OG0025610

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3313

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggcgtcgaagttcgggttggccggcgggattccggagcggcgggtccggcccatttgggacgccatcgattctcgccaattcaaaaacgctctcaagctcgtcaccgctctcctctccaagtttcccaactccccttactgtctggcgcttaaagctctcatcctggaaaggatggggaaatcggaagaagcattgtcgctttgcctcaacgccaaggagcatttgcacaaaaacgactccgttttgatggacgatctcactctcagcaccttgcaaatcgtcttccaacgcctcgatcacttggaaatggcaaccagttgttacgaatatgcttgcggtaaatttccgagcaatttggagctgatgatggggctctttaactgctatgttcgcgaatactcgtttgtcaagcagcaacagacagctataagaatgtacaaacttgttggcgaggagaggtttttgctctgggctgtgtgtagcatccagttacaggtgttttgtggaaatggaggagaaaagctgctactcttagctgaaggcttagtgaagaagcatgttgcctctcatagcttgcatgagcctgaagctctcatggtctatatttccatattggaacaacaagcaaagtatggggatgctttggagattctctctggtaaattaggatcgcttttactggttgaagttgataagctacgcatacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010324 GO:0010467 GO:0016043 GO:0016192 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0030054 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0055044 GO:0061024 GO:0071704 GO:0071840 GO:0098657 GO:0099024 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NatB_MDM20

Protein Analysis

237

Amino Acids

26.73

Weight (kDa)

7.59

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025610)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8166598.1_g000001 Rmu_sc0006567.1_g000001
rosa_samantha	Rh5DG499900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	40, 110
AccII	CGCG	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	5 cut(s)	27, 40, 43, 108, 339
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	561, 609
AcyI	GRCGYC	2 cut(s)	5, 63
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	85, 689
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	9 cut(s)	100, 158, 364, 428, 526, 539, 576, 593, 700
AluI	AGCT	9 cut(s)	100, 158, 364, 428, 526, 539, 576, 593, 700
AlwI	GGATC	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	2 cut(s)	21, 50
ApeKI	GCWGC	2 cut(s)	415, 526
ApoI	RAATTY	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	46, 51
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	427, 513
BccI	CCATC	4 cut(s)	74, 169, 244, 364
BciT130I	CCWGG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	3 cut(s)	41, 416, 527
BlsI	GCNGC	3 cut(s)	42, 417, 528
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 51
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	495, 631
BpiI	GAAGAC	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	5, 63
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	318, 490, 687
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	4 cut(s)	162, 180, 486, 646
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	3 cut(s)	318, 490, 687
BseRI	GAGGAG	3 cut(s)	104, 470, 531
BseXI	GCAGC	2 cut(s)	427, 513
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	23, 52
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	24, 35, 49
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	23, 52
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	256, 298, 671
Bsp68I	TCGCGA	1 cut(s)	396
BspACI	CCGC	5 cut(s)	27, 40, 43, 108, 339
BspANI	GGCC	2 cut(s)	23, 52
BspCNI	CTCAG	1 cut(s)	279
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	679
BsrBI	CCGCTC	2 cut(s)	40, 110
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	318, 490, 687
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	256, 298, 671
BssNI	GRCGYC	2 cut(s)	5, 63
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	143
BstACI	GRCGYC	2 cut(s)	5, 63
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	25, 337, 578
BstDEI	CTNAG	3 cut(s)	266, 535, 547
BstF5I	GGATG	4 cut(s)	162, 180, 486, 646
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	259, 301, 674
BstMBI	GATC	3 cut(s)	256, 298, 671
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 155, 393
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	427, 513
BstV2I	GAAGAC	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	23, 52
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	162, 180, 486, 646
BtuMI	TCGCGA	1 cut(s)	396
Cac8I	GCNNGC	3 cut(s)	25, 337, 578
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	46, 51
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	3 cut(s)	560, 581, 598
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	266, 535, 547
DpnI	GATC	3 cut(s)	258, 300, 673
DpnII	GATC	3 cut(s)	256, 298, 671
EaeI	YGGCCR	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	561, 609
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	563, 584, 601
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	559, 580, 597
FauI	CCCGC	2 cut(s)	20, 36
Fnu4HI	GCNGC	3 cut(s)	41, 416, 527
FokI	GGATG	4 cut(s)	149, 187, 473, 653
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	41, 416, 527
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	41, 416, 527
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	23, 52
HapII	CCGG	3 cut(s)	24, 35, 49
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	2 cut(s)	5, 63
Hin1II	CATG	3 cut(s)	563, 584, 601
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	4 cut(s)	31, 71, 239, 652
HpaII	CCGG	3 cut(s)	24, 35, 49
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	187, 351
Hpy188III	TCNNGA	2 cut(s)	35, 395
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	229, 277, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 155, 393
HpyF3I	CTNAG	3 cut(s)	266, 535, 547
Hsp92I	GRCGYC	2 cut(s)	5, 63
Hsp92II	CATG	3 cut(s)	563, 584, 601
HspAI	GCGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	256, 298, 671
LmnI	GCTCC	3 cut(s)	37, 220, 361
Lsp1109I	GCAGC	2 cut(s)	427, 513
LweI	GCATC	2 cut(s)	495, 631
MaeIII	GTNAC	3 cut(s)	103, 323, 492
MalI	GATC	3 cut(s)	258, 300, 673
MbiI	CCGCTC	2 cut(s)	40, 110
MboI	GATC	3 cut(s)	256, 298, 671
MboII	GAAGA	3 cut(s)	200, 277, 565
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	4 cut(s)	80, 344, 355, 665
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	125, 218, 305, 448, 453, 509, 577
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	2 cut(s)	153, 381
MspI	CCGG	3 cut(s)	24, 35, 49
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	49, 155, 393
NaeI	GCCGGC	1 cut(s)	25
NdeII	GATC	3 cut(s)	256, 298, 671
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	3 cut(s)	563, 584, 601
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	103
NruI	TCGCGA	1 cut(s)	396
NspI	RCATGY	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	31, 71, 652
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	42, 417, 528
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	46, 51
RruI	TCGCGA	1 cut(s)	396
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	153, 381
SatI	GCNGC	3 cut(s)	41, 416, 527
Sau3AI	GATC	3 cut(s)	256, 298, 671
Sau96I	GGNCC	2 cut(s)	46, 51
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	495, 631
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	80, 344, 355, 665
SsiI	CCGC	5 cut(s)	27, 40, 43, 108, 339
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	8, 69, 297
TasI	AATT	4 cut(s)	80, 344, 355, 665
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	31, 71, 652
Tru1I	TTAA	2 cut(s)	153, 381
Tru9I	TTAA	2 cut(s)	153, 381
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	415, 526
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.