Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006582.1

Orthogroup ID

OG0031372

Physical Location & Seq

Genomic Coordinates Forward (+)

110846 .. 113153

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006582.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgttgtatcaacaactttctgatgatgtttatgctgttactgctattcaaggtgccctcaacaccgaagacagagacaaaataatcaaagagtttaaagatggtttaacccaagttctcatatcaactgatgtacttgccagaggctttgaccaacagcaggttaactgtgttgtcaattatgatcttccggtcaaatattcacctggtccccggtcacaacctgtagaacctgattatgaggtgtacctgcatagaattggcagggcagggcgttttggtcgcaagggagctgtgtttaacttgatttgcgatgataatgacgagttggtcatgtcaaaaattgggcagtattttgacatcaaagtaccagaggttaaaaatactgatgaggcttttgaaagggatcttaaaacagctggcttactattaaacaaaactgaaagcctctacagtactgaaggatttaagaaaccatttcatcaagatcaggcagtggaaaccttagaattgccgcaatgccgctcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

177

Amino Acids

20.1

Weight (kDa)

4.84

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031372)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006582.1_g000019
rosa_samantha	Rh3DG183300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	151, 258
AccB1I	GGYRCC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	525
AciI	CCGC	2 cut(s)	515, 523
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	4 cut(s)	135, 248, 369, 457
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	50, 401
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	293, 419
AluI	AGCT	2 cut(s)	293, 419
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	225, 451
BfuAI	ACCTGC	2 cut(s)	151, 258
BisI	GCNGC	2 cut(s)	515, 523
BlsI	GCNGC	2 cut(s)	516, 524
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	207, 214
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	55, 211
BmrFI	CCNGG	2 cut(s)	207, 214
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	191, 214
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	184, 406, 487
BspACI	CCGC	2 cut(s)	515, 523
BspLI	GGNNCC	2 cut(s)	55, 211
BspMI	ACCTGC	2 cut(s)	151, 258
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	184, 406, 487
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	170, 455
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	505, 526
BstKTI	GATC	3 cut(s)	187, 409, 490
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	184, 406, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 212
BstSFI	CTRYAG	2 cut(s)	225, 451
BstSLI	GKGCMC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	2 cut(s)	151, 258
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	134, 247, 368, 456
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	6 cut(s)	147, 293, 395, 419, 423, 447
CviKI_1	RGCY	6 cut(s)	147, 293, 395, 419, 423, 447
CviQI	GTAC	4 cut(s)	134, 247, 368, 456
DdeI	CTNAG	2 cut(s)	505, 526
DpnI	GATC	3 cut(s)	186, 408, 489
DpnII	GATC	3 cut(s)	184, 406, 487
DraI	TTTAAA	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	337
FaiI	YATR	6 cut(s)	33, 122, 183, 240, 255, 335
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	515, 523
Fsp4HI	GCNGC	2 cut(s)	515, 523
GluI	GCNGC	2 cut(s)	515, 523
HapII	CCGG	2 cut(s)	191, 214
Hin1II	CATG	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	191, 214
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	166, 247
Hpy188I	TCNGA	2 cut(s)	22, 529
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	2 cut(s)	166, 247
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	2 cut(s)	170, 455
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	505, 526
Hsp92II	CATG	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	184, 406, 487
LmnI	GCTCC	1 cut(s)	290
MabI	ACCWGGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	37, 216
MalI	GATC	3 cut(s)	186, 408, 489
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	3 cut(s)	184, 406, 487
MboII	GAAGA	2 cut(s)	80, 179
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	178, 258, 342, 509
MnlI	CCTC	6 cut(s)	68, 137, 235, 367, 385, 458
MseI	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	191, 214
MspR9I	CCNGG	2 cut(s)	207, 214
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	184, 406, 487
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	55, 211
NmuCI	GTSAC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	516, 524
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	55, 211
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	4 cut(s)	135, 248, 369, 457
RsaNI	GTAC	4 cut(s)	134, 247, 368, 456
SaqAI	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
SatI	GCNGC	2 cut(s)	515, 523
Sau3AI	GATC	3 cut(s)	184, 406, 487
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	207, 214
SduI	GDGCHC	1 cut(s)	58
SexAI	ACCWGGT	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	225, 451
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	4 cut(s)	178, 258, 342, 509
SsiI	CCGC	2 cut(s)	515, 523
SspI	AATATT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	205, 212
TaaI	ACNGT	2 cut(s)	170, 455
TasI	AATT	4 cut(s)	178, 258, 342, 509
TatI	WGTACW	2 cut(s)	133, 455
TauI	GCSGC	2 cut(s)	517, 525
Tru1I	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
Tru9I	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.