Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0031372

Physical Location & Seq

Genomic Coordinates Forward (+)

16240778 .. 16242384

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTGTATCAACAACTTTCTGATGATGGTTATGCTGTTACTGCTATTCAAGGTGCCCTCAACACCGAGGACAGAGACAAAATAATCAAAGAGTTCAAAGATGGTTTAACCCAAGTTCTCATATCAACTGATGTACTTGCCAGATGCTTTGACCAACAGCAGGTTAACTGTGTTGTCAATTATGATCTTCCAGTCAAATATTCACCTGGTCCCTGGTCACAACCTGTAGAACCTGATTATGAGGTGTACCTGCATAGAATTGGCAGGGCAGGGCGTTTTGGTCGCAAGGGAGCTGTGTTTAACTTGATTTGCGATGATAATGACGAGTTGGTCATGTCAAAAATTGAGCAGTATTTTGACAGCAAAGTACCAGAGGTTAAAAATACTGATGAGGCTTTTGAAGGGGCTCTTAAAACAGCTGGCTTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

143

Amino Acids

16.11

Weight (kDa)

4.59

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	6 - 94	6e-21	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0031372)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006582.1_g000019
rosa_samantha	Rh3DG183300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	151, 258
AccB1I	GGYRCC	1 cut(s)	53
AfaI	GTAC	3 cut(s)	135, 248, 369
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	50, 97, 401
AjnI	CCWGG	2 cut(s)	205, 212
AluBI	AGCT	2 cut(s)	293, 419
AluI	AGCT	2 cut(s)	293, 419
Alw26I	GTCTC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	409
BccI	CCATC	2 cut(s)	20, 95
BciT130I	CCWGG	2 cut(s)	207, 214
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	2 cut(s)	151, 258
Bme1390I	CCNGG	2 cut(s)	207, 214
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	55, 211
BmrFI	CCNGG	2 cut(s)	207, 214
BmsI	GCATC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	66, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	207, 214
BseDI	CCNNGG	2 cut(s)	66, 212
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	58, 409
Bsp143I	GATC	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	55, 211
BspMI	ACCTGC	2 cut(s)	151, 258
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	66, 212
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	207, 214
Bst4CI	ACNGT	2 cut(s)	170, 429
BstC8I	GCNNGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	2 cut(s)	207, 214
BstSCI	CCNGG	2 cut(s)	205, 212
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	327
BveI	ACCTGC	2 cut(s)	151, 258
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	134, 247, 368
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	5 cut(s)	293, 395, 407, 419, 423
CviKI_1	RGCY	5 cut(s)	293, 395, 407, 419, 423
CviQI	GTAC	3 cut(s)	134, 247, 368
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	205, 212
EcoT38I	GRGCYC	1 cut(s)	409
FaeI	CATG	1 cut(s)	337
FaiI	YATR	6 cut(s)	33, 122, 183, 240, 255, 335
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	166, 247
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	166, 247
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	170, 429
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	290
LweI	GCATC	1 cut(s)	134
MabI	ACCWGGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	37, 216
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	58, 409
MluCI	AATT	3 cut(s)	178, 258, 342
MnlI	CCTC	5 cut(s)	61, 68, 235, 367, 385
MseI	TTAA	5 cut(s)	107, 165, 300, 378, 411
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	207, 214
MvaI	CCWGG	2 cut(s)	207, 214
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	55, 211
NmuCI	GTSAC	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	205, 212
PspGI	CCWGG	2 cut(s)	205, 212
PspN4I	GGNNCC	2 cut(s)	55, 211
PspPI	GGNCC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	135, 248, 369
RsaNI	GTAC	3 cut(s)	134, 247, 368
SaqAI	TTAA	5 cut(s)	107, 165, 300, 378, 411
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	207, 214
SduI	GDGCHC	2 cut(s)	58, 409
SexAI	ACCWGGT	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	178, 258, 342
SspI	AATATT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	205, 212
TaaI	ACNGT	2 cut(s)	170, 429
TasI	AATT	3 cut(s)	178, 258, 342
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	5 cut(s)	107, 165, 300, 378, 411
Tru9I	TTAA	5 cut(s)	107, 165, 300, 378, 411
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.