Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006582.1

Orthogroup ID

OG0031372

Physical Location & Seq

Genomic Coordinates Forward (+)

110846 .. 113153

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgttgtatcaacaactttctgatgatgtttatgctgttactgctattcaaggtgccctcaacaccgaagacagagacaaaataatcaaagagtttaaagatggtttaacccaagttctcatatcaactgatgtacttgccagaggctttgaccaacagcaggttaactgtgttgtcaattatgatcttccggtcaaatattcacctggtccccggtcacaacctgtagaacctgattatgaggtgtacctgcatagaattggcagggcagggcgttttggtcgcaagggagctgtgtttaacttgatttgcgatgataatgacgagttggtcatgtcaaaaattgggcagtattttgacatcaaagtaccagaggttaaaaatactgatgaggcttttgaaagggatcttaaaacagctggcttactattaaacaaaactgaaagcctctacagtactgaaggatttaagaaaccatttcatcaagatcaggcagtggaaaccttagaattgccgcaatgccgctcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

177

Amino Acids

20.1

Weight (kDa)

4.84

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	10 - 94	3.2e-21	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031372)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006582.1_g000019
rosa_samantha	Rh3DG183300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	151, 258
AccB1I	GGYRCC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	525
AciI	CCGC	2 cut(s)	515, 523
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	4 cut(s)	135, 248, 369, 457
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	50, 401
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	293, 419
AluI	AGCT	2 cut(s)	293, 419
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	225, 451
BfuAI	ACCTGC	2 cut(s)	151, 258
BisI	GCNGC	2 cut(s)	515, 523
BlsI	GCNGC	2 cut(s)	516, 524
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	207, 214
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	55, 211
BmrFI	CCNGG	2 cut(s)	207, 214
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	191, 214
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	184, 406, 487
BspACI	CCGC	2 cut(s)	515, 523
BspLI	GGNNCC	2 cut(s)	55, 211
BspMI	ACCTGC	2 cut(s)	151, 258
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	184, 406, 487
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	170, 455
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	505, 526
BstKTI	GATC	3 cut(s)	187, 409, 490
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	184, 406, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 212
BstSFI	CTRYAG	2 cut(s)	225, 451
BstSLI	GKGCMC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	2 cut(s)	151, 258
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	134, 247, 368, 456
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	6 cut(s)	147, 293, 395, 419, 423, 447
CviKI_1	RGCY	6 cut(s)	147, 293, 395, 419, 423, 447
CviQI	GTAC	4 cut(s)	134, 247, 368, 456
DdeI	CTNAG	2 cut(s)	505, 526
DpnI	GATC	3 cut(s)	186, 408, 489
DpnII	GATC	3 cut(s)	184, 406, 487
DraI	TTTAAA	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	337
FaiI	YATR	6 cut(s)	33, 122, 183, 240, 255, 335
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	515, 523
Fsp4HI	GCNGC	2 cut(s)	515, 523
GluI	GCNGC	2 cut(s)	515, 523
HapII	CCGG	2 cut(s)	191, 214
Hin1II	CATG	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	191, 214
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	166, 247
Hpy188I	TCNGA	2 cut(s)	22, 529
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	2 cut(s)	166, 247
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	2 cut(s)	170, 455
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	505, 526
Hsp92II	CATG	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	184, 406, 487
LmnI	GCTCC	1 cut(s)	290
MabI	ACCWGGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	37, 216
MalI	GATC	3 cut(s)	186, 408, 489
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	3 cut(s)	184, 406, 487
MboII	GAAGA	2 cut(s)	80, 179
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	178, 258, 342, 509
MnlI	CCTC	6 cut(s)	68, 137, 235, 367, 385, 458
MseI	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	191, 214
MspR9I	CCNGG	2 cut(s)	207, 214
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	184, 406, 487
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	55, 211
NmuCI	GTSAC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	516, 524
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	55, 211
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	4 cut(s)	135, 248, 369, 457
RsaNI	GTAC	4 cut(s)	134, 247, 368, 456
SaqAI	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
SatI	GCNGC	2 cut(s)	515, 523
Sau3AI	GATC	3 cut(s)	184, 406, 487
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	207, 214
SduI	GDGCHC	1 cut(s)	58
SexAI	ACCWGGT	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	225, 451
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	4 cut(s)	178, 258, 342, 509
SsiI	CCGC	2 cut(s)	515, 523
SspI	AATATT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	205, 212
TaaI	ACNGT	2 cut(s)	170, 455
TasI	AATT	4 cut(s)	178, 258, 342, 509
TatI	WGTACW	2 cut(s)	133, 455
TauI	GCSGC	2 cut(s)	517, 525
Tru1I	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
Tru9I	TTAA	8 cut(s)	96, 107, 165, 300, 378, 411, 431, 468
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.