Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006593.1

Orthogroup ID

OG0031373

Physical Location & Seq

Genomic Coordinates Reverse (-)

27095 .. 30820

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006593.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggctttggtcgatgtcaccaaatcttgcctcgattcaattacccagatatcagagcacattgaaggttctgttctttacctagatgctggatctacagagagtttccagtacattggagcatttcctctcttactcaaccatggagttcgtgccatttgcagtttggaaaatatgtcttctcttgatgcggtagttgattggaatgcaaattctgatcctgatacgaaagtcgtggtggtaacaactcgtttgctaagtgatgcacatcgatatatattacgttgtcttagcactcatccagctgtccgttgttgtactatattcacatctatctcagagatagcccattcagcatatcctgattcacctctgggaccagatgcatttcatgaatatgaatccttgcttgtccaagattatgaggaacttgtcaggaaaggtgaaaagaaacccttacagcctggtgttagcaatacaagtctggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006624 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016485 GO:0019538 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec1

Protein Analysis

163

Amino Acids

17.9

Weight (kDa)

4.82

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031373)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006593.1_g000005 Rmu_sc0010460.1_g000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	2 cut(s)	100, 212
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	2 cut(s)	113, 319
AgsI	TTSAA	2 cut(s)	39, 65
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	100, 212
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	10, 360, 455
AvaII	GGWCC	1 cut(s)	377
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	465
BmsI	GCATC	4 cut(s)	76, 178, 253, 373
BpiI	GAAGAC	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	92, 217
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	350
BspDI	ATCGAT	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	100, 212
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	92, 217
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	465
BstDEI	CTNAG	3 cut(s)	257, 290, 337
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	95, 220
BstMBI	GATC	2 cut(s)	92, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	271
BsuTUI	ATCGAT	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	298
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	112, 318
CviAII	CATG	2 cut(s)	143, 392
CviJI	RGCY	4 cut(s)	5, 305, 347, 463
CviKI_1	RGCY	4 cut(s)	5, 305, 347, 463
CviQI	GTAC	2 cut(s)	112, 318
DdeI	CTNAG	3 cut(s)	257, 290, 337
DpnI	GATC	2 cut(s)	94, 219
DpnII	GATC	2 cut(s)	92, 217
Eco130I	CCWWGG	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	146, 395
FaiI	YATR	9 cut(s)	144, 176, 276, 278, 323, 358, 393, 399, 423
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	142, 391
FokI	GGATG	1 cut(s)	285
FspBI	CTAG	1 cut(s)	83
Hin1II	CATG	2 cut(s)	146, 395
HinfI	GANTC	3 cut(s)	35, 365, 401
HphI	GGTGA	3 cut(s)	10, 360, 455
Hpy188I	TCNGA	3 cut(s)	55, 217, 340
Hpy188III	TCNNGA	6 cut(s)	185, 221, 362, 392, 436, 485
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	162, 209, 266, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	257, 290, 337
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	146, 395
Kzo9I	GATC	2 cut(s)	92, 217
LmnI	GCTCC	1 cut(s)	119
LweI	GCATC	4 cut(s)	76, 178, 253, 373
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	16, 241
MalI	GATC	2 cut(s)	94, 219
MboI	GATC	2 cut(s)	92, 217
MboII	GAAGA	1 cut(s)	171
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	39, 211
MnlI	CCTC	4 cut(s)	41, 138, 381, 418
Mph1103I	ATGCAT	1 cut(s)	388
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	92, 217
NlaIII	CATG	2 cut(s)	146, 395
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	388
PagI	TCATGA	1 cut(s)	391
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	35, 365, 401
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	113, 319
RsaNI	GTAC	2 cut(s)	112, 318
RseI	CAYNNNNRTG	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	92, 217
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	70, 84, 286, 307, 373, 445
SfaNI	GCATC	4 cut(s)	76, 178, 253, 373
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	2 cut(s)	39, 211
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	142
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	3 cut(s)	12, 33, 271
TasI	AATT	2 cut(s)	39, 211
TatI	WGTACW	2 cut(s)	111, 317
TfiI	GAWTC	3 cut(s)	35, 365, 401
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	380, 408, 414
TspGWI	ACGGA	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.