Rmu_sc0010460.1_g000010

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010460.1
Physical Location & Seq
Forward (+)
26217 .. 26987
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010460.1_g000010.1.cds

Sequence Viewer

Length: 240 bp
atggctttggtcgatgtcaccaaatcttgcctcgattcaattacccagatatcagagcacattgaaggttctgttctttacctagatgctggatctacagagagtttccagtacattggagcatttcctctcttactcaaccatggagttcgtgccatttgcagtttggaaaatatgtcttctcttgaagcggttgagcaaattatcctattctttcaagcaagaagctttcttttatga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.7

Weight (kDa)

4.43

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031373)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006593.1_g000005 Rmu_sc0010460.1_g000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 100
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 4 cut(s) 39, 65, 188, 218
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 60
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 96
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 142
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 5, 228
CviKI_1 RGCY 2 cut(s) 5, 228
CviQI GTAC 1 cut(s) 112
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 142
Eco32I GATATC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 144, 176, 238
FatI CATG 1 cut(s) 142
FspBI CTAG 1 cut(s) 83
Hin1II CATG 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 162
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 59, 75, 122
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 1 cut(s) 171
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 39, 201
MnlI CCTC 2 cut(s) 41, 138
NcoI CCATGG 1 cut(s) 142
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 70, 84, 230
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 39, 201
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 142
TaqI TCGA 2 cut(s) 12, 33
TasI AATT 2 cut(s) 39, 201
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 35
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.