Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006594.1

Orthogroup ID

OG0031374

Physical Location & Seq

Genomic Coordinates Forward (+)

20828 .. 21232

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006594.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgcctttcaaggggtacgtggagtccggacgggtggctctggtcaagtacgggccggactacggtaggctcgtcgtgatggtcgatgtcatcgatcagaatcgggctctggttgatgcacctgatatgaagaagactctgattgctgccatggaggctggtgatgttaagaacaactgggaacagagttcatggggaaggaagctgatagtgcagaagagaagagcgtcgcttaatgatttcgataggttcaagctcatgttggccacgatcaagaaaactggaatcctcaggcaggagctaacgaagctgaagaaatcaagtgcagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

110

Amino Acids

12.46

Weight (kDa)

9.99

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031374)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006594.1_g000004
rosa_wichuraiana	Rw5G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	17, 50
AfiI	CCNNNNNNNGG	3 cut(s)	11, 62, 295
AgsI	TTSAA	2 cut(s)	10, 253
AluBI	AGCT	4 cut(s)	205, 256, 301, 310
AluI	AGCT	4 cut(s)	205, 256, 301, 310
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	2 cut(s)	53, 264
ApeKI	GCWGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 62, 295
Bse1I	ACTGG	2 cut(s)	182, 286
Bse21I	CCTNAGG	1 cut(s)	290
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	11, 62, 295
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	182, 286
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	55, 266
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	27, 56
BslI	CCNNNNNNNGG	3 cut(s)	11, 62, 295
BsnI	GGCC	2 cut(s)	55, 266
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	94, 270
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	55, 266
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	182, 286
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	94, 270
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	212, 217
BstBAI	YACGTR	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstKTI	GATC	2 cut(s)	97, 273
BstMBI	GATC	2 cut(s)	94, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 211, 307
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	55, 266
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	16, 49
CviAII	CATG	3 cut(s)	151, 192, 259
CviQI	GTAC	2 cut(s)	16, 49
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	2 cut(s)	96, 272
DpnII	GATC	2 cut(s)	94, 270
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	212, 217
EarI	CTCTTC	2 cut(s)	212, 217
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	154, 195, 262
FaiI	YATR	4 cut(s)	128, 152, 193, 260
FatI	CATG	3 cut(s)	150, 191, 258
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	55, 266
HapII	CCGG	2 cut(s)	27, 56
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	154, 195, 262
HinfI	GANTC	4 cut(s)	23, 100, 136, 285
HpaII	CCGG	2 cut(s)	27, 56
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	99, 141, 332
Hpy188III	TCNNGA	3 cut(s)	27, 76, 274
Hpy99I	CGWCG	2 cut(s)	77, 232
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	119, 214, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 211, 307
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	154, 195, 262
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	94, 270
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	96, 272
MboI	GATC	2 cut(s)	94, 270
MboII	GAAGA	5 cut(s)	142, 145, 229, 234, 325
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	32, 130
MnlI	CCTC	2 cut(s)	148, 299
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	168, 234
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	27, 56
MwoI	GCNNNNNNNGC	3 cut(s)	155, 211, 307
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	94, 270
NlaIII	CATG	3 cut(s)	154, 195, 262
PciSI	GCTCTTC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 81, 90
PfeI	GAWTC	2 cut(s)	100, 285
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	31, 130
PpsI	GAGTC	2 cut(s)	31, 130
Ppu21I	YACGTR	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	17, 50
RsaNI	GTAC	2 cut(s)	16, 49
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	168, 234
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	94, 270
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	32, 130
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	21, 124, 207, 251, 258, 303, 312
SfaNI	GCATC	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	84, 93, 243
TfiI	GAWTC	2 cut(s)	100, 285
Tru1I	TTAA	2 cut(s)	168, 234
Tru9I	TTAA	2 cut(s)	168, 234
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	143, 180
XagI	CCTNNNNNAGG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.