Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0031374

Physical Location & Seq

Genomic Coordinates Forward (+)

13415237 .. 13415949

Gene Structure 713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATCCGGGAAAAATGCCTTTCAAGAGGTACGTGGAGTCCGGACGGGTGGCTCTGGTCAAGTACGGGCCGGACTACGGTAGGCTCGTCGTGATGGTCGATGTCATCGATCAGAATCGGATTGAGATCCCCAGGGTTCCGAAGAAGAAGACTCTGATTGCTGCCATGGAGGCTGGTGATGTTAAGAACAACTGGGAACAGAGTTCATGGGGAAGGAAGCTGATAGTGCAGAAGAGAAGAGCGTCGCTTAATGATTTCGATAGGTTCAAGCTCATGTTGGCCACGATCAAGAAAACTGGAATCCTCAGGCAGGAGCTAACGAAGCTGAAGAAATCAAGTGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

115

Amino Acids

13.21

Weight (kDa)

10.28

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	40 - 97	1.2e-18	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031374)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006594.1_g000004
rosa_wichuraiana	Rw5G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	41
AclWI	GGATC	2 cut(s)	12, 121
AcoI	YGGCCR	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	32, 65
AfiI	CCNNNNNNNGG	2 cut(s)	77, 310
AgsI	TTSAA	2 cut(s)	25, 268
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	4 cut(s)	220, 271, 316, 325
AluI	AGCT	4 cut(s)	220, 271, 316, 325
AlwI	GGATC	2 cut(s)	12, 121
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	2 cut(s)	68, 279
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	9, 133
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	6, 138
BmrFI	CCNGG	2 cut(s)	9, 133
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	34
BsaBI	GATNNNNATC	2 cut(s)	114, 125
BsaJI	CCNNGG	3 cut(s)	131, 132, 165
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 310
Bse1I	ACTGG	2 cut(s)	197, 301
Bse21I	CCTNAGG	1 cut(s)	305
Bse8I	GATNNNNATC	2 cut(s)	114, 125
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	131, 132, 165
BseJI	GATNNNNATC	2 cut(s)	114, 125
BseLI	CCNNNNNNNGG	2 cut(s)	77, 310
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	197, 301
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	70, 281
BshVI	ATCGAT	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	8, 42, 71
BslI	CCNNNNNNNGG	2 cut(s)	77, 310
BsnI	GGCC	2 cut(s)	70, 281
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	4, 109, 126, 285
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	2 cut(s)	70, 281
BspCNI	CTCAG	1 cut(s)	318
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	6, 138
BspPI	GGATC	2 cut(s)	12, 121
BspQI	GCTCTTC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	197, 301
BssECI	CCNNGG	3 cut(s)	131, 132, 165
BssMI	GATC	4 cut(s)	4, 109, 126, 285
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	227, 232
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstKTI	GATC	4 cut(s)	7, 112, 129, 288
BstMBI	GATC	4 cut(s)	4, 109, 126, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 226, 322
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	7, 131
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	4, 126
BstYI	RGATCY	2 cut(s)	4, 126
Bsu15I	ATCGAT	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	70, 281
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	31, 64
CviAII	CATG	3 cut(s)	166, 207, 274
CviJI	RGCY	9 cut(s)	53, 70, 85, 173, 220, 271, 281, 316, 325
CviKI_1	RGCY	9 cut(s)	53, 70, 85, 173, 220, 271, 281, 316, 325
CviQI	GTAC	2 cut(s)	31, 64
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	4 cut(s)	6, 111, 128, 287
DpnII	GATC	4 cut(s)	4, 109, 126, 285
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	227, 232
EarI	CTCTTC	2 cut(s)	227, 232
Eco130I	CCWWGG	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	169, 210, 277
FaiI	YATR	3 cut(s)	167, 208, 275
FatI	CATG	3 cut(s)	165, 206, 273
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	70, 281
HapII	CCGG	3 cut(s)	8, 42, 71
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	169, 210, 277
HinfI	GANTC	4 cut(s)	38, 115, 151, 300
HpaII	CCGG	3 cut(s)	8, 42, 71
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	5 cut(s)	114, 120, 141, 156, 347
Hpy188III	TCNNGA	4 cut(s)	25, 42, 91, 289
Hpy99I	CGWCG	2 cut(s)	92, 247
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	229, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 226, 322
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	169, 210, 277
Kpn2I	TCCGGA	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	4, 109, 126, 285
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	33
MalI	GATC	4 cut(s)	6, 111, 128, 287
MboI	GATC	4 cut(s)	4, 109, 126, 285
MboII	GAAGA	6 cut(s)	154, 157, 160, 244, 249, 340
MflI	RGATCY	2 cut(s)	4, 126
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	47, 145
MnlI	CCTC	3 cut(s)	21, 163, 314
Mox20I	TGGCCA	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	2 cut(s)	183, 249
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	3 cut(s)	8, 42, 71
MspR9I	CCNGG	2 cut(s)	9, 133
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	170, 226, 322
NciI	CCSGG	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	4, 109, 126, 285
NlaIII	CATG	3 cut(s)	169, 210, 277
NlaIV	GGNNCC	2 cut(s)	6, 138
PasI	CCCWGGG	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 96, 105
PfeI	GAWTC	2 cut(s)	115, 300
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	46, 145
PpsI	GAGTC	2 cut(s)	46, 145
Ppu21I	YACGTR	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	6, 138
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	4, 126
RsaI	GTAC	2 cut(s)	32, 65
RsaNI	GTAC	2 cut(s)	31, 64
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	183, 249
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	4 cut(s)	4, 109, 126, 285
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	47, 145
ScrFI	CCNGG	2 cut(s)	9, 133
SetI	ASST	7 cut(s)	32, 36, 222, 266, 273, 318, 327
StyD4I	CCNGG	2 cut(s)	7, 131
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	99, 108, 258
TfiI	GAWTC	2 cut(s)	115, 300
Tru1I	TTAA	2 cut(s)	183, 249
Tru9I	TTAA	2 cut(s)	183, 249
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.