Rmu_sc0006650.1_g000003

Aminomethyltransferase folate-binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006650.1
Physical Location & Seq
Reverse (-)
23087 .. 24489
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006650.1_g000003.1.cds

Sequence Viewer

Length: 621 bp
atgtcaacaagctccaagcttggagtgagcacgaacccccacagtttgacttttggtgctgctgaggtgcttgcgaggcctattgagttgctatcaagagatgtgcgaggggattgttggggctttgtagaaatatacgcacggggactgctggggctctatggagaggctgtagacagatgtgtgcgacagacggtcggttcaagtggattctggcctgtttcggtgattacgttgctggttctgggctcttggaatccgtggcttcaatatgtgttgtggtggcggctagggattgaaggctacaaaataaaggtttcaaggttagagcttcgtgctgataacacgaagaagcaacaaaagctcacacttttctcatcttccaaaacgaagaccaaggctttgccattcgacctctcccctcctcctattgaccacgacctcttggacactgtggcagcaactgcaggagcaaaagttttagatgatgggattatcgaaacctttgataacgacgaccaagcttttgatgatgtcgataatggtgttgcggttcgtattctcttacttcttccattggatactgctctactttataacttcctcaatcaaacaatttaa

Protein Analysis

206

Amino Acids

22.78

Weight (kDa)

5.18

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0031375)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006650.1_g000003
rosa_roxburghii Rroxscaffold_3G00237810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccI GTMKAC 1 cut(s) 174
AciI CCGC 2 cut(s) 286, 551
AgsI TTSAA 4 cut(s) 204, 269, 299, 321
AhdI GACNNNNNGTC 1 cut(s) 194
AluBI AGCT 5 cut(s) 12, 19, 331, 364, 524
AluI AGCT 5 cut(s) 12, 19, 331, 364, 524
Alw21I GWGCWC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 2 cut(s) 77, 215
ApeKI GCWGC 2 cut(s) 59, 458
ArsI GACNNNNNNTTYG 4 cut(s) 385, 417, 509, 541
AsuHPI GGTGA 1 cut(s) 238
BanII GRGCYC 2 cut(s) 159, 251
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 46, 470
BccI CCATC 1 cut(s) 482
BciVI GTATCC 1 cut(s) 574
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 2 cut(s) 171, 465
BfuI GTATCC 1 cut(s) 574
BisI GCNGC 3 cut(s) 60, 287, 459
BlsI GCNGC 3 cut(s) 61, 288, 460
BmeRI GACNNNNNGTC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 260, 396
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 462, 492
BseDI CCNNGG 2 cut(s) 260, 396
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 46, 470
BseYI CCCAGC 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 79, 217
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 32
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 79, 217
Bsp1286I GDGCHC 3 cut(s) 32, 159, 251
BspACI CCGC 2 cut(s) 286, 551
BspANI GGCC 2 cut(s) 79, 217
BspCNI CTCAG 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 260, 396
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 44, 196, 454
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 260
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 76, 361, 464
BstSFI CTRYAG 2 cut(s) 171, 465
BstV1I GCAGC 2 cut(s) 46, 470
BstV2I GAAGAC 1 cut(s) 398
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 2 cut(s) 79, 217
BtgI CCRYGG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 464
DdeI CTNAG 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 159, 251
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 2 cut(s) 159, 251
ErhI CCWWGG 1 cut(s) 396
FaiI YATR 4 cut(s) 136, 162, 273, 597
FaqI GGGAC 1 cut(s) 159
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 60, 287, 459
FriOI GRGCYC 2 cut(s) 159, 251
Fsp4HI GCNGC 3 cut(s) 60, 287, 459
FspBI CTAG 1 cut(s) 290
GluI GCNGC 3 cut(s) 60, 287, 459
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 2 cut(s) 79, 217
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 2 cut(s) 17, 522
HinfI GANTC 2 cut(s) 210, 256
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 6, 175
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 2 cut(s) 6, 175
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 3 cut(s) 44, 196, 454
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 361, 464
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 233
LmnI GCTCC 2 cut(s) 17, 470
LpnPI CCDG 6 cut(s) 137, 199, 224, 230, 231, 453
Lsp1109I GCAGC 2 cut(s) 46, 470
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 233
MboII GAAGA 4 cut(s) 361, 372, 403, 563
MhlI GDGCHC 3 cut(s) 32, 159, 251
MluCI AATT 1 cut(s) 615
MnlI CCTC 9 cut(s) 58, 69, 101, 160, 425, 432, 435, 452, 614
MseI TTAA 1 cut(s) 619
MwoI GCNNNNNNNGC 3 cut(s) 76, 361, 464
PceI AGGCCT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfeI GAWTC 2 cut(s) 210, 256
PkrI GCNGC 3 cut(s) 61, 288, 460
PsiI TTATAA 1 cut(s) 597
PspFI CCCAGC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 464
SaqAI TTAA 1 cut(s) 619
SatI GCNGC 3 cut(s) 60, 287, 459
SduI GDGCHC 3 cut(s) 32, 159, 251
SfcI CTRYAG 2 cut(s) 171, 465
Sse9I AATT 1 cut(s) 615
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 2 cut(s) 286, 551
SspMI CTAG 1 cut(s) 290
StuI AGGCCT 1 cut(s) 79
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 44, 196, 454
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 411, 498, 537
TasI AATT 1 cut(s) 615
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 2 cut(s) 210, 256
Tru1I TTAA 1 cut(s) 619
Tru9I TTAA 1 cut(s) 619
TscAI CASTG 1 cut(s) 457
TseI GCWGC 2 cut(s) 59, 458
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.