Rroxscaffold_3G00237810

Aminomethyltransferase folate-binding domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
25518474 .. 25518707
234 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00237810.1

Sequence Viewer

Length: 234 bp
ATGAGGACCAAGGCTTTGCCATTCGACCTCTCCCCTCCTCCTATTGACCACGACCTCTTGGACACCGAGGCAGCAACTGCAGGAGCAAAAGTTTTAGATGATGGGATTATCGAAACCTTTGAAAACGACGACCAAGCTTTTGATGAAGTCAATAATGGTGTTGTGGTGCGTATTCTCTTACTTCTTCCATTGGATGCTGCTCTACTCTATAACTTCCTCAATCAAACAATTTAA

Protein Analysis

77

Amino Acids

8.45

Weight (kDa)

4.05

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0031375)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006650.1_g000003
rosa_roxburghii Rroxscaffold_3G00237810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 71, 197
ArsI GACNNNNNNTTYG 3 cut(s) 30, 122, 154
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 83, 184
BccI CCATC 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 72, 198
BlsI GCNGC 2 cut(s) 73, 199
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 9, 66
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
BseDI CCNNGG 2 cut(s) 9, 66
BseGI GGATG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 83, 184
BspMAI CTGCAG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 9, 66
BssT1I CCWWGG 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 77
BstF5I GGATG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 83, 184
BtsCI GGATG 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 6
CviJI RGCY 2 cut(s) 14, 137
CviKI_1 RGCY 2 cut(s) 14, 137
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaiI YATR 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 72, 198
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 72, 198
GluI GCNGC 2 cut(s) 72, 198
HindIII AAGCTT 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 1 cut(s) 66
Lsp1109I GCAGC 2 cut(s) 83, 184
LweI GCATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 176
MluCI AATT 1 cut(s) 228
MnlI CCTC 6 cut(s) 38, 45, 48, 61, 65, 227
MseI TTAA 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 73, 199
PspPI GGNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 232
SatI GCNGC 2 cut(s) 72, 198
Sau96I GGNCC 1 cut(s) 6
SetI ASST 4 cut(s) 30, 57, 119, 139
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 78
SgeI CNNG 6 cut(s) 22, 62, 70, 79, 93, 146
SinI GGWCC 1 cut(s) 6
Sse9I AATT 1 cut(s) 228
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 24, 111
TasI AATT 1 cut(s) 228
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TseI GCWGC 2 cut(s) 71, 197
TspDTI ATGAA 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.