Rmu_sc0006892.1_g000008

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006892.1
OG0025612
Physical Location & Seq
Forward (+)
39969 .. 40657
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006892.1_g000008.1.cds

Sequence Viewer

Length: 588 bp
atggatcatcatcatctcgctctcctctctctttttctcttcctatcctccgctgccgcgtccgccgtaagcgacggtggcgatcctttcatccgacaagtcgtgccggaggcggaggaggatccactcctccacgcggagcatcacttctcaaacttcaaagccaccttcggaaagacctacgcgagccaggaggagcacgactacaggttcggcgtcttcaaggccaacctccgccgagccaaaatacaccgggggctggaccccaccgccgtccacggtgtcaccaagttctccgatctcactcccaaggagtttcgccggaattttctcgggctcaagaagggtctccggctaccggaggacgcccacacggctccgatccttccgaccaatgatcttcccaccgacttcgactggcgcgagaaaggtgccgtcacgccggtcaaggaccagggttcgtgtggatcatgctggtcgtttagtgcggccggagcactggaaggagctcattatttggcaacaggggagctcgtgagtctcagcagtcagcagcttgtggactgtgatcatgaggtttgctcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

195

Amino Acids

21.44

Weight (kDa)

5.91

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025612)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006892.1_g000008 Rmu_sc0040770.1_g000001
rosa_samantha Rh6AG423900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AccII CGCG 4 cut(s) 59, 137, 185, 423
AciI CCGC 8 cut(s) 51, 57, 63, 113, 137, 235, 270, 488
AclWI GGATC 6 cut(s) 12, 77, 116, 129, 376, 475
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 1 cut(s) 325
AcyI GRCGYC 2 cut(s) 216, 366
AfiI CCNNNNNNNGG 3 cut(s) 136, 259, 358
AgsI TTSAA 2 cut(s) 160, 223
AjnI CCWGG 2 cut(s) 189, 453
AluBI AGCT 3 cut(s) 509, 532, 556
AluI AGCT 3 cut(s) 509, 532, 556
Alw21I GWGCWC 4 cut(s) 201, 499, 511, 534
Alw26I GTCTC 2 cut(s) 353, 545
AlwI GGATC 6 cut(s) 12, 77, 116, 129, 376, 475
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 225, 489
ApeKI GCWGC 2 cut(s) 53, 553
ApoI RAATTY 1 cut(s) 325
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 262, 451
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 2 cut(s) 262, 451
BamHI GGATCC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 3 cut(s) 339, 511, 534
BauI CACGAG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 4 cut(s) 201, 499, 511, 534
BbvI GCAGC 2 cut(s) 40, 565
BceAI ACGGC 4 cut(s) 50, 257, 390, 419
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 2 cut(s) 191, 455
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 353, 545
BfmI CTRYAG 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 4 cut(s) 54, 57, 489, 554
BlsI GCNGC 4 cut(s) 55, 58, 490, 555
Bme1390I CCNGG 3 cut(s) 191, 254, 455
Bme18I GGWCC 2 cut(s) 262, 451
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 262, 451
BmiI GGNNCC 4 cut(s) 123, 264, 378, 433
BmrFI CCNGG 3 cut(s) 191, 254, 455
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 2 cut(s) 216, 366
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 253, 277, 309, 454
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 259, 358
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 422, 504
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 191, 455
BseDI CCNNGG 4 cut(s) 253, 277, 309, 454
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 3 cut(s) 136, 259, 358
BseMII CTCAG 1 cut(s) 556
BseNI ACTGG 2 cut(s) 422, 504
BseRI GAGGAG 4 cut(s) 14, 119, 131, 209
BseX3I CGGCCG 1 cut(s) 489
BseXI GCAGC 2 cut(s) 40, 565
Bsh1236I CGCG 4 cut(s) 59, 137, 185, 423
Bsh1285I CGRYCG 1 cut(s) 492
BshFI GGCC 2 cut(s) 227, 491
BshNI GGYRCC 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 492
BsiHKAI GWGCWC 4 cut(s) 201, 499, 511, 534
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 7 cut(s) 107, 253, 322, 352, 359, 443, 492
BslI CCNNNNNNNGG 3 cut(s) 136, 259, 358
BsmAI GTCTC 2 cut(s) 353, 545
BsnI GGCC 2 cut(s) 227, 491
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 5 cut(s) 201, 339, 499, 511, 534
Bsp143I GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
BspACI CCGC 8 cut(s) 51, 57, 63, 113, 137, 235, 270, 488
BspANI GGCC 2 cut(s) 227, 491
BspCNI CTCAG 1 cut(s) 555
BspFNI CGCG 4 cut(s) 59, 137, 185, 423
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 123, 264, 378, 433
BspPI GGATC 6 cut(s) 12, 77, 116, 129, 376, 475
BspT107I GGYRCC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 2 cut(s) 422, 504
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 253, 277, 309, 454
BssMI GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
BssNI GRCGYC 2 cut(s) 216, 366
BssSI CACGAG 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 533
Bst2UI CCWGG 2 cut(s) 191, 455
Bst4CI ACNGT 3 cut(s) 77, 281, 566
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 216, 366
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 542
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 4 cut(s) 59, 137, 185, 423
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 8 cut(s) 7, 85, 124, 301, 384, 400, 470, 571
BstMAI GTCTC 2 cut(s) 353, 545
BstMBI GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 4 cut(s) 62, 78, 374, 494
BstNI CCWGG 2 cut(s) 191, 455
BstSCI CCNGG 3 cut(s) 189, 252, 453
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 4 cut(s) 59, 137, 185, 423
BstV1I GCAGC 2 cut(s) 40, 565
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZI CGGCCG 1 cut(s) 489
BsuRI GGCC 2 cut(s) 227, 491
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 262, 451
CseI GACGC 3 cut(s) 48, 205, 374
CviAII CATG 2 cut(s) 471, 572
DdeI CTNAG 1 cut(s) 542
DpnI GATC 8 cut(s) 6, 84, 123, 300, 383, 399, 469, 570
DpnII GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
EaeI YGGCCR 1 cut(s) 489
EagI CGGCCG 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 3 cut(s) 52, 128, 224
Ecl136II GAGCTC 2 cut(s) 509, 532
EclXI CGGCCG 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 3 cut(s) 339, 511, 534
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 262, 451
Eco52I CGGCCG 1 cut(s) 489
Eco53kI GAGCTC 2 cut(s) 509, 532
Eco88I CYCGRG 1 cut(s) 332
EcoICRI GAGCTC 2 cut(s) 509, 532
EcoRII CCWGG 2 cut(s) 189, 453
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 3 cut(s) 339, 511, 534
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 474, 575
FaiI YATR 3 cut(s) 472, 573, 586
FatI CATG 2 cut(s) 470, 571
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 4 cut(s) 54, 57, 489, 554
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 3 cut(s) 339, 511, 534
Fsp4HI GCNGC 4 cut(s) 54, 57, 489, 554
GlaI GCGC 1 cut(s) 422
GluI GCNGC 4 cut(s) 54, 57, 489, 554
HaeIII GGCC 2 cut(s) 227, 491
HapII CCGG 7 cut(s) 107, 253, 322, 352, 359, 443, 492
HgaI GACGC 3 cut(s) 48, 205, 374
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 2 cut(s) 216, 366
Hin1II CATG 2 cut(s) 474, 575
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 1 cut(s) 538
HpaII CCGG 7 cut(s) 107, 253, 322, 352, 359, 443, 492
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 277, 562
Hpy188I TCNGA 5 cut(s) 95, 173, 298, 381, 390
Hpy188III TCNNGA 3 cut(s) 340, 535, 572
Hpy8I GTNNAC 2 cut(s) 277, 562
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 178, 337, 395, 497
HpyCH4III ACNGT 3 cut(s) 77, 281, 566
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 78, 374, 494
HpyF3I CTNAG 1 cut(s) 542
Hsp92I GRCGYC 2 cut(s) 216, 366
Hsp92II CATG 2 cut(s) 474, 575
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
LmnI GCTCC 6 cut(s) 139, 196, 382, 494, 506, 529
Lsp1109I GCAGC 2 cut(s) 40, 565
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 283, 436
MalI GATC 8 cut(s) 6, 84, 123, 300, 383, 399, 469, 570
MboI GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
MboII GAAGA 3 cut(s) 31, 211, 392
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 5 cut(s) 201, 339, 499, 511, 534
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 547
MmeI TCCRAC 2 cut(s) 118, 413
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 7 cut(s) 107, 253, 322, 352, 359, 443, 492
MspR9I CCNGG 3 cut(s) 191, 254, 455
MvaI CCWGG 2 cut(s) 191, 455
MvnI CGCG 4 cut(s) 59, 137, 185, 423
MwoI GCNNNNNNNGC 4 cut(s) 62, 78, 374, 494
NciI CCSGG 1 cut(s) 254
NdeII GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
NlaIII CATG 2 cut(s) 474, 575
NlaIV GGNNCC 4 cut(s) 123, 264, 378, 433
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 283, 436
PagI TCATGA 1 cut(s) 571
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PkrI GCNGC 4 cut(s) 55, 58, 490, 555
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
Psp124BI GAGCTC 2 cut(s) 511, 534
Psp6I CCWGG 2 cut(s) 189, 453
PspGI CCWGG 2 cut(s) 189, 453
PspN4I GGNNCC 4 cut(s) 123, 264, 378, 433
PspPI GGNCC 2 cut(s) 262, 451
PsuI RGATCY 1 cut(s) 121
SacI GAGCTC 2 cut(s) 511, 534
SatI GCNGC 4 cut(s) 54, 57, 489, 554
Sau3AI GATC 8 cut(s) 4, 82, 121, 298, 381, 397, 467, 568
Sau96I GGNCC 2 cut(s) 262, 451
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 191, 254, 455
SduI GDGCHC 5 cut(s) 201, 339, 499, 511, 534
SetI ASST 9 cut(s) 170, 182, 212, 234, 433, 511, 534, 558, 579
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 262, 451
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 325
SsiI CCGC 8 cut(s) 51, 57, 63, 113, 137, 235, 270, 488
SstI GAGCTC 2 cut(s) 511, 534
StyD4I CCNGG 3 cut(s) 189, 252, 453
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 3 cut(s) 77, 281, 566
TaqI TCGA 1 cut(s) 414
TasI AATT 1 cut(s) 325
TauI GCSGC 2 cut(s) 59, 491
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 2 cut(s) 283, 436
TseI GCWGC 2 cut(s) 53, 553
Tsp45I GTSAC 2 cut(s) 283, 436
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 2 cut(s) 262, 451
XapI RAATTY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.