Rh6AG423900

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0025612
Physical Location & Seq
Forward (+)
61643235 .. 61643768
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG423900.1

Sequence Viewer

Length: 534 bp
ATGTGTACGTTAGAAGTTCCGTTCATCATTTCCTTTCCCACACGTACTCCTAACTCGCTCGCTCCACCAATGGATCATCATCATCTCGCTCTCCTCTCTCTTTTTCTCTTCCTATCCTCCGCCGCCGCGTCCGCCGTAAGCGACGCTGGCGATCCTTTCATCCGACAAGTCGTGCCGGAGGCGGAGGAGGATCCACTCCTCCACGCGGAGCATCACTTCTCAAACTTCAAAGCCACCTTCGGAAAGACCTACGCGAGCCAGGAGGAGCACGACTACAGGTTCGGAGTCTTCAAGGCCAACCTCCGCCGAGCCAAAATACATCAAGGGCTGGACCCCACCGCCGTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCCAAGGAGTTTCGCCGGAATTTTCTCGGGCTCAAGAAGGGTCTCCGGCTACCGGAGGACGCCCACACGGCTCCGATCCTTCCGACCAATGATCTTCCCACCGACTTCGACTGGCGCGAGAAAGGTGCCGTCACGCCGGTCAAGGACCAGGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

6.35

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 73 - 129 2.6e-15 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025612)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006892.1_g000008 Rmu_sc0040770.1_g000001
rosa_samantha Rh6AG423900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccII CGCG 4 cut(s) 128, 206, 254, 492
AciI CCGC 8 cut(s) 120, 123, 126, 132, 182, 206, 304, 339
AclWI GGATC 5 cut(s) 81, 146, 185, 198, 445
AcsI RAATTY 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 3 cut(s) 7, 46, 528
AfiI CCNNNNNNNGG 2 cut(s) 205, 427
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 2 cut(s) 229, 292
AjnI CCWGG 2 cut(s) 258, 522
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 5 cut(s) 81, 146, 185, 198, 445
AlwNI CAGNNNCTG 1 cut(s) 529
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 331, 520
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 2 cut(s) 331, 520
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 270
BceAI ACGGC 4 cut(s) 119, 326, 459, 488
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 2 cut(s) 260, 524
BcoDI GTCTC 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 2 cut(s) 260, 524
Bme18I GGWCC 2 cut(s) 331, 520
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 331, 520
BmiI GGNNCC 4 cut(s) 192, 333, 447, 502
BmrFI CCNGG 2 cut(s) 260, 524
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 346, 378
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 427
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 491
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 2 cut(s) 260, 524
BseDI CCNNGG 2 cut(s) 346, 378
BseGI GGATG 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 205, 427
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 4 cut(s) 83, 188, 200, 278
Bsh1236I CGCG 4 cut(s) 128, 206, 254, 492
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 5 cut(s) 176, 391, 421, 428, 512
BslI CCNNNNNNNGG 2 cut(s) 205, 427
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 270, 408
Bsp143I GATC 6 cut(s) 73, 151, 190, 367, 450, 466
BspACI CCGC 8 cut(s) 120, 123, 126, 132, 182, 206, 304, 339
BspANI GGCC 1 cut(s) 296
BspFNI CGCG 4 cut(s) 128, 206, 254, 492
BspLI GGNNCC 4 cut(s) 192, 333, 447, 502
BspPI GGATC 5 cut(s) 81, 146, 185, 198, 445
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 346, 378
BssMI GATC 6 cut(s) 73, 151, 190, 367, 450, 466
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 260, 524
Bst4CI ACNGT 2 cut(s) 350, 531
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 60, 148, 256
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 4 cut(s) 128, 206, 254, 492
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 6 cut(s) 76, 154, 193, 370, 453, 469
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 6 cut(s) 73, 151, 190, 367, 450, 466
BstMWI GCNNNNNNNGC 3 cut(s) 131, 147, 443
BstNI CCWGG 2 cut(s) 260, 524
BstSCI CCNGG 2 cut(s) 258, 522
BstSFI CTRYAG 1 cut(s) 274
BstUI CGCG 4 cut(s) 128, 206, 254, 492
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 3 cut(s) 60, 148, 256
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 1 cut(s) 492
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 331, 520
CseI GACGC 3 cut(s) 117, 152, 443
CsiI ACCWGGT 1 cut(s) 522
Csp6I GTAC 3 cut(s) 6, 45, 527
CviJI RGCY 8 cut(s) 233, 258, 296, 311, 328, 406, 424, 446
CviKI_1 RGCY 8 cut(s) 233, 258, 296, 311, 328, 406, 424, 446
CviQI GTAC 3 cut(s) 6, 45, 527
DpnI GATC 6 cut(s) 75, 153, 192, 369, 452, 468
DpnII GATC 6 cut(s) 73, 151, 190, 367, 450, 466
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 4 cut(s) 109, 121, 197, 293
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 331, 520
Eco88I CYCGRG 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 258, 522
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 2 cut(s) 123, 126
GlaI GCGC 1 cut(s) 491
GluI GCNGC 2 cut(s) 123, 126
HaeIII GGCC 1 cut(s) 296
HapII CCGG 5 cut(s) 176, 391, 421, 428, 512
HgaI GACGC 3 cut(s) 117, 152, 443
HhaI GCGC 1 cut(s) 492
Hin1I GRCGYC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 1 cut(s) 285
HpaII CCGG 5 cut(s) 176, 391, 421, 428, 512
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 6, 346
Hpy188I TCNGA 6 cut(s) 164, 242, 284, 367, 450, 459
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 2 cut(s) 6, 346
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 247, 406, 464
HpyCH4III ACNGT 2 cut(s) 350, 531
HpyCH4IV ACGT 2 cut(s) 8, 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 147, 443
HpySE526I ACGT 2 cut(s) 8, 43
Hsp92I GRCGYC 1 cut(s) 435
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 6 cut(s) 73, 151, 190, 367, 450, 466
LmnI GCTCC 4 cut(s) 67, 208, 265, 451
LweI GCATC 1 cut(s) 220
MabI ACCWGGT 1 cut(s) 522
MaeII ACGT 2 cut(s) 8, 43
MaeIII GTNAC 2 cut(s) 352, 505
MalI GATC 6 cut(s) 75, 153, 192, 369, 452, 468
MboI GATC 6 cut(s) 73, 151, 190, 367, 450, 466
MboII GAAGA 3 cut(s) 100, 280, 461
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 270, 408
MluCI AATT 1 cut(s) 394
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 2 cut(s) 187, 482
MnlI CCTC 9 cut(s) 104, 127, 172, 178, 181, 209, 256, 311, 424
MspI CCGG 5 cut(s) 176, 391, 421, 428, 512
MspR9I CCNGG 2 cut(s) 260, 524
MvaI CCWGG 2 cut(s) 260, 524
MvnI CGCG 4 cut(s) 128, 206, 254, 492
MwoI GCNNNNNNNGC 3 cut(s) 131, 147, 443
NdeII GATC 6 cut(s) 73, 151, 190, 367, 450, 466
NlaIV GGNNCC 4 cut(s) 192, 333, 447, 502
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 2 cut(s) 352, 505
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 258, 522
PspGI CCWGG 2 cut(s) 258, 522
PspN4I GGNNCC 4 cut(s) 192, 333, 447, 502
PspPI GGNCC 2 cut(s) 331, 520
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 3 cut(s) 7, 46, 528
RsaNI GTAC 3 cut(s) 6, 45, 527
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 6 cut(s) 73, 151, 190, 367, 450, 466
Sau96I GGNCC 2 cut(s) 331, 520
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 260, 524
SduI GDGCHC 2 cut(s) 270, 408
SetI ASST 8 cut(s) 11, 46, 239, 251, 281, 303, 502, 528
SexAI ACCWGGT 1 cut(s) 522
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 2 cut(s) 331, 520
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 1 cut(s) 394
SsiI CCGC 8 cut(s) 120, 123, 126, 132, 182, 206, 304, 339
StyD4I CCNGG 2 cut(s) 258, 522
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 350, 531
TaiI ACGT 2 cut(s) 11, 46
TaqI TCGA 1 cut(s) 483
TasI AATT 1 cut(s) 394
TauI GCSGC 2 cut(s) 125, 128
TseFI GTSAC 2 cut(s) 352, 505
Tsp45I GTSAC 2 cut(s) 352, 505
TspDTI ATGAA 2 cut(s) 13, 148
TspGWI ACGGA 1 cut(s) 9
VpaK11BI GGWCC 2 cut(s) 331, 520
XapI RAATTY 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.