Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007280.1

Orthogroup ID

OG0030686

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 941

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007280.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 457 bp

atggatatcgatttcaaagagtaccaattgcgctgcgagctccgcggccacgaagacgacgttcgtggaatttgcgtgtgcggcaatgcgggaatagctacttcttcgcgtgatcgaactgttaggttatggtccttggacccttccgacgaacgccggtatgcgccggcgaagattctgctgggccacacgagtttcgtgggcccagtggtgtggattgagcccaatgacgagtatccagaaggccgaattgtgtctggtggcatggacactatggtgttggtgtgggactggaagactggggagaaggtccaaactctcaagggacatcagttgcaggtcaccggcgtcgctttcgataatggagacattgtttcatcttctgtggacaatactttaaaaaggtggaggaatggccaactggtagaatcttgggaggctcataaggcagcaatcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0002237 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006690 GO:0006692 GO:0006693 GO:0006807 GO:0006914 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010517 GO:0010518 GO:0010605 GO:0010720 GO:0010975 GO:0010976 GO:0016236 GO:0019222 GO:0019538 GO:0019752 GO:0019941 GO:0022008 GO:0022603 GO:0022604 GO:0030154 GO:0030163 GO:0030307 GO:0030334 GO:0030335 GO:0031323 GO:0031324 GO:0031344 GO:0031346 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032429 GO:0032430 GO:0032496 GO:0032501 GO:0032502 GO:0032787 GO:0032879 GO:0033559 GO:0033993 GO:0040008 GO:0040012 GO:0040017 GO:0042221 GO:0043085 GO:0043162 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0045202 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0051960 GO:0051962 GO:0060191 GO:0060193 GO:0060255 GO:0060284 GO:0060341 GO:0061919 GO:0065007 GO:0065009 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:0080090 GO:0098693 GO:0120035 GO:1900044 GO:1900045 GO:1901564 GO:1901565 GO:1901568 GO:1901575 GO:1901700 GO:1901701 GO:1902914 GO:1902915 GO:1903320 GO:1903321 GO:1903421 GO:1903423 GO:1903859 GO:1903861 GO:2000026 GO:2000145 GO:2000147 GO:2001222 GO:2001224

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PFU PUL WD40

Protein Analysis

152

Amino Acids

17.1

Weight (kDa)

5.34

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030686)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008795
rosa_multiflora	Rmu_sc0007280.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccII	CGCG	2 cut(s)	45, 109
AciI	CCGC	4 cut(s)	43, 45, 81, 89
AcoI	YGGCCR	2 cut(s)	46, 415
AcsI	RAATTY	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	40, 98
AluI	AGCT	2 cut(s)	40, 98
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	5 cut(s)	46, 184, 202, 244, 415
ApaI	GGGCCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	33, 449
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	33, 166
AspS9I	GGNCC	6 cut(s)	132, 139, 184, 202, 203, 310
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	3 cut(s)	132, 139, 310
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	417
BanII	GRGCYC	3 cut(s)	42, 206, 225
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	60, 302
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	4 cut(s)	34, 46, 82, 450
BlsI	GCNGC	4 cut(s)	35, 47, 83, 451
Bme18I	GGWCC	3 cut(s)	132, 139, 310
BmgT120I	GGNCC	6 cut(s)	132, 139, 184, 202, 203, 310
BmiI	GGNNCC	2 cut(s)	141, 204
BmrI	ACTGGG	2 cut(s)	200, 309
BmuI	ACTGGG	2 cut(s)	200, 309
BpiI	GAAGAC	2 cut(s)	60, 302
BpuEI	CTTGAG	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	43, 135
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bse118I	RCCGGY	3 cut(s)	156, 166, 344
Bse1I	ACTGG	4 cut(s)	206, 296, 304, 426
Bse3DI	GCAATG	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	43, 135
BseMI	GCAATG	1 cut(s)	91
BseNI	ACTGG	4 cut(s)	206, 296, 304, 426
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	2 cut(s)	45, 109
BshFI	GGCC	5 cut(s)	48, 186, 204, 246, 417
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	157, 167, 345
BslFI	GGGAC	2 cut(s)	302, 339
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	2 cut(s)	302, 339
BsnI	GGCC	5 cut(s)	48, 186, 204, 246, 417
Bsp120I	GGGCCC	1 cut(s)	202
Bsp1286I	GDGCHC	3 cut(s)	42, 206, 225
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	4 cut(s)	43, 45, 81, 89
BspANI	GGCC	5 cut(s)	48, 186, 204, 246, 417
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	2 cut(s)	45, 109
BspLI	GGNNCC	2 cut(s)	141, 204
BspMI	ACCTGC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	3 cut(s)	156, 166, 344
BsrI	ACTGG	4 cut(s)	206, 296, 304, 426
BssAI	RCCGGY	3 cut(s)	156, 166, 344
BssECI	CCNNGG	2 cut(s)	43, 135
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	38, 168
BstDSI	CCRYGG	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	340
BstFNI	CGCG	2 cut(s)	45, 109
BstHHI	GCGC	2 cut(s)	33, 166
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 42, 81, 95, 446
BstPI	GGTNACC	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	2 cut(s)	45, 109
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	2 cut(s)	60, 302
BstXI	CCANNNNNNTGG	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	5 cut(s)	48, 186, 204, 246, 417
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	38, 168
CfoI	GCGC	2 cut(s)	33, 166
Cfr10I	RCCGGY	3 cut(s)	156, 166, 344
Cfr13I	GGNCC	6 cut(s)	132, 139, 184, 202, 203, 310
Cfr42I	CCGCGG	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	9 cut(s)	40, 48, 98, 186, 204, 223, 246, 417, 440
CviKI_1	RGCY	9 cut(s)	40, 48, 98, 186, 204, 223, 246, 417, 440
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	2 cut(s)	46, 415
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	3 cut(s)	42, 206, 225
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	3 cut(s)	132, 139, 310
Eco53kI	GAGCTC	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	3 cut(s)	42, 206, 225
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	268
FaiI	YATR	5 cut(s)	130, 162, 266, 275, 444
FaqI	GGGAC	2 cut(s)	302, 339
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	34, 46, 82, 450
FriOI	GRGCYC	3 cut(s)	42, 206, 225
Fsp4HI	GCNGC	4 cut(s)	34, 46, 82, 450
GlaI	GCGC	2 cut(s)	32, 165
GluI	GCNGC	4 cut(s)	34, 46, 82, 450
GsaI	CCCAGC	1 cut(s)	185
HaeIII	GGCC	5 cut(s)	48, 186, 204, 246, 417
HapII	CCGG	3 cut(s)	157, 167, 345
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	2 cut(s)	33, 166
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	2 cut(s)	31, 164
HinP1I	GCGC	2 cut(s)	31, 164
HinfI	GANTC	2 cut(s)	175, 428
HpaII	CCGG	3 cut(s)	157, 167, 345
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	3 cut(s)	62, 152, 353
HpyAV	CCTTC	3 cut(s)	153, 236, 301
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 42, 81, 95, 446
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	2 cut(s)	31, 164
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	5 cut(s)	65, 96, 184, 307, 372
MfeI	CAATTG	1 cut(s)	26
MhlI	GDGCHC	3 cut(s)	42, 206, 225
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	3 cut(s)	26, 69, 249
MluNI	TGGCCA	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	402, 430
Mox20I	TGGCCA	1 cut(s)	417
MreI	CGCCGGCG	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	157, 167, 345
MunI	CAATTG	1 cut(s)	26
MvnI	CGCG	2 cut(s)	45, 109
MwoI	GCNNNNNNNGC	5 cut(s)	37, 42, 81, 95, 446
NaeI	GCCGGC	1 cut(s)	168
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	141, 204
NmuCI	GTSAC	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	175, 428
PkrI	GCNGC	4 cut(s)	35, 47, 83, 451
Psp124BI	GAGCTC	1 cut(s)	42
PspEI	GGTNACC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	141, 204
PspOMI	GGGCCC	1 cut(s)	202
PspPI	GGNCC	6 cut(s)	132, 139, 184, 202, 203, 310
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	4 cut(s)	34, 46, 82, 450
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	6 cut(s)	132, 139, 184, 202, 203, 310
SduI	GDGCHC	3 cut(s)	42, 206, 225
SetI	ASST	7 cut(s)	42, 63, 100, 128, 312, 342, 407
Sfr303I	CCGCGG	1 cut(s)	46
SgrAI	CRCCGGYG	2 cut(s)	166, 344
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	3 cut(s)	132, 139, 310
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	26, 69, 249
SsiI	CCGC	4 cut(s)	43, 45, 81, 89
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	9, 115, 357
TasI	AATT	3 cut(s)	26, 69, 249
TauI	GCSGC	2 cut(s)	48, 84
TfiI	GAWTC	2 cut(s)	175, 428
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	33, 449
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	3 cut(s)	132, 139, 310
XapI	RAATTY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.