Rmu_sc0007280.1_g000001

Phospholipase A-2-activating

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007280.1
OG0030686
Physical Location & Seq
Reverse (-)
2 .. 941
940 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 457 bp
atggatatcgatttcaaagagtaccaattgcgctgcgagctccgcggccacgaagacgacgttcgtggaatttgcgtgtgcggcaatgcgggaatagctacttcttcgcgtgatcgaactgttaggttatggtccttggacccttccgacgaacgccggtatgcgccggcgaagattctgctgggccacacgagtttcgtgggcccagtggtgtggattgagcccaatgacgagtatccagaaggccgaattgtgtctggtggcatggacactatggtgttggtgtgggactggaagactggggagaaggtccaaactctcaagggacatcagttgcaggtcaccggcgtcgctttcgataatggagacattgtttcatcttctgtggacaatactttaaaaaggtggaggaatggccaactggtagaatcttgggaggctcataaggcagcaatcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0002237 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006690 GO:0006692 GO:0006693 GO:0006807 GO:0006914 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010517 GO:0010518 GO:0010605 GO:0010720 GO:0010975 GO:0010976 GO:0016236 GO:0019222 GO:0019538 GO:0019752 GO:0019941 GO:0022008 GO:0022603 GO:0022604 GO:0030154 GO:0030163 GO:0030307 GO:0030334 GO:0030335 GO:0031323 GO:0031324 GO:0031344 GO:0031346 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032429 GO:0032430 GO:0032496 GO:0032501 GO:0032502 GO:0032787 GO:0032879 GO:0033559 GO:0033993 GO:0040008 GO:0040012 GO:0040017 GO:0042221 GO:0043085 GO:0043162 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0045202 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0051960 GO:0051962 GO:0060191 GO:0060193 GO:0060255 GO:0060284 GO:0060341 GO:0061919 GO:0065007 GO:0065009 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:0080090 GO:0098693 GO:0120035 GO:1900044 GO:1900045 GO:1901564 GO:1901565 GO:1901568 GO:1901575 GO:1901700 GO:1901701 GO:1902914 GO:1902915 GO:1903320 GO:1903321 GO:1903421 GO:1903423 GO:1903859 GO:1903861 GO:2000026 GO:2000145 GO:2000147 GO:2001222 GO:2001224
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
PFU PUL WD40

Protein Analysis

152

Amino Acids

17.1

Weight (kDa)

5.34

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 2 - 141 4.2e-09 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 4 - 136 3.7e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 5 - 137 9.8e-20 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 10 - 151 4e-14 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 14 - 138 2.4e-10 WDR3 second beta-propeller domain
Beta-prop_SCAP PF24017 32 - 137 1.9e-06 SCAP Beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 52 - 134 3.9e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 81 - 137 3e-12 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 82 - 150 3.5e-10 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 83 - 139 1e-07 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 83 - 137 6.1e-07 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030686)

Species Orthologous Gene IDs
rosa_laevigata RLG00000008795
rosa_multiflora Rmu_sc0007280.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccII CGCG 2 cut(s) 45, 109
AciI CCGC 4 cut(s) 43, 45, 81, 89
AcoI YGGCCR 2 cut(s) 46, 415
AcsI RAATTY 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 16
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 2 cut(s) 40, 98
AluI AGCT 2 cut(s) 40, 98
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 360
AoxI GGCC 5 cut(s) 46, 184, 202, 244, 415
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 33, 449
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 2 cut(s) 33, 166
AspS9I GGNCC 6 cut(s) 132, 139, 184, 202, 203, 310
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 3 cut(s) 132, 139, 310
BaeGI GKGCMC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 417
BanII GRGCYC 3 cut(s) 42, 206, 225
BauI CACGAG 1 cut(s) 190
BbsI GAAGAC 2 cut(s) 60, 302
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciVI GTATCC 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 4 cut(s) 34, 46, 82, 450
BlsI GCNGC 4 cut(s) 35, 47, 83, 451
Bme18I GGWCC 3 cut(s) 132, 139, 310
BmgT120I GGNCC 6 cut(s) 132, 139, 184, 202, 203, 310
BmiI GGNNCC 2 cut(s) 141, 204
BmrI ACTGGG 2 cut(s) 200, 309
BmuI ACTGGG 2 cut(s) 200, 309
BpiI GAAGAC 2 cut(s) 60, 302
BpuEI CTTGAG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 43, 135
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bse118I RCCGGY 3 cut(s) 156, 166, 344
Bse1I ACTGG 4 cut(s) 206, 296, 304, 426
Bse3DI GCAATG 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 43, 135
BseMI GCAATG 1 cut(s) 91
BseNI ACTGG 4 cut(s) 206, 296, 304, 426
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 2 cut(s) 45, 109
BshFI GGCC 5 cut(s) 48, 186, 204, 246, 417
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 3 cut(s) 157, 167, 345
BslFI GGGAC 2 cut(s) 302, 339
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 2 cut(s) 302, 339
BsnI GGCC 5 cut(s) 48, 186, 204, 246, 417
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 3 cut(s) 42, 206, 225
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 4 cut(s) 43, 45, 81, 89
BspANI GGCC 5 cut(s) 48, 186, 204, 246, 417
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 2 cut(s) 45, 109
BspLI GGNNCC 2 cut(s) 141, 204
BspMI ACCTGC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 3 cut(s) 156, 166, 344
BsrI ACTGG 4 cut(s) 206, 296, 304, 426
BssAI RCCGGY 3 cut(s) 156, 166, 344
BssECI CCNNGG 2 cut(s) 43, 135
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 38, 168
BstDSI CCRYGG 1 cut(s) 43
BstEII GGTNACC 1 cut(s) 340
BstFNI CGCG 2 cut(s) 45, 109
BstHHI GCGC 2 cut(s) 33, 166
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 5 cut(s) 37, 42, 81, 95, 446
BstPI GGTNACC 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 2 cut(s) 45, 109
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 60, 302
BstXI CCANNNNNNTGG 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 9
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 5 cut(s) 48, 186, 204, 246, 417
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 38, 168
CfoI GCGC 2 cut(s) 33, 166
Cfr10I RCCGGY 3 cut(s) 156, 166, 344
Cfr13I GGNCC 6 cut(s) 132, 139, 184, 202, 203, 310
Cfr42I CCGCGG 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 265
CviJI RGCY 9 cut(s) 40, 48, 98, 186, 204, 223, 246, 417, 440
CviKI_1 RGCY 9 cut(s) 40, 48, 98, 186, 204, 223, 246, 417, 440
CviQI GTAC 1 cut(s) 22
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DraI TTTAAA 1 cut(s) 399
EaeI YGGCCR 2 cut(s) 46, 415
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 3 cut(s) 42, 206, 225
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 3 cut(s) 132, 139, 310
Eco53kI GAGCTC 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 340
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 3 cut(s) 42, 206, 225
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 130, 162, 266, 275, 444
FaqI GGGAC 2 cut(s) 302, 339
FatI CATG 1 cut(s) 264
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 4 cut(s) 34, 46, 82, 450
FriOI GRGCYC 3 cut(s) 42, 206, 225
Fsp4HI GCNGC 4 cut(s) 34, 46, 82, 450
GlaI GCGC 2 cut(s) 32, 165
GluI GCNGC 4 cut(s) 34, 46, 82, 450
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 5 cut(s) 48, 186, 204, 246, 417
HapII CCGG 3 cut(s) 157, 167, 345
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 33, 166
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 2 cut(s) 31, 164
HinP1I GCGC 2 cut(s) 31, 164
HinfI GANTC 2 cut(s) 175, 428
HpaII CCGG 3 cut(s) 157, 167, 345
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 3 cut(s) 62, 152, 353
HpyAV CCTTC 3 cut(s) 153, 236, 301
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 42, 81, 95, 446
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 2 cut(s) 31, 164
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 20
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 5 cut(s) 65, 96, 184, 307, 372
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 3 cut(s) 42, 206, 225
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 3 cut(s) 26, 69, 249
MluNI TGGCCA 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 2 cut(s) 402, 430
Mox20I TGGCCA 1 cut(s) 417
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 417
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 157, 167, 345
MunI CAATTG 1 cut(s) 26
MvnI CGCG 2 cut(s) 45, 109
MwoI GCNNNNNNNGC 5 cut(s) 37, 42, 81, 95, 446
NaeI GCCGGC 1 cut(s) 168
NdeII GATC 1 cut(s) 112
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 141, 204
NmuCI GTSAC 1 cut(s) 340
OliI CACNNNNGTG 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 175, 428
PkrI GCNGC 4 cut(s) 35, 47, 83, 451
Psp124BI GAGCTC 1 cut(s) 42
PspEI GGTNACC 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 141, 204
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 6 cut(s) 132, 139, 184, 202, 203, 310
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 42
SacII CCGCGG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 4 cut(s) 34, 46, 82, 450
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 6 cut(s) 132, 139, 184, 202, 203, 310
SduI GDGCHC 3 cut(s) 42, 206, 225
SetI ASST 7 cut(s) 42, 63, 100, 128, 312, 342, 407
Sfr303I CCGCGG 1 cut(s) 46
SgrAI CRCCGGYG 2 cut(s) 166, 344
SgrBI CCGCGG 1 cut(s) 46
SinI GGWCC 3 cut(s) 132, 139, 310
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 26, 69, 249
SsiI CCGC 4 cut(s) 43, 45, 81, 89
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 9, 115, 357
TasI AATT 3 cut(s) 26, 69, 249
TauI GCSGC 2 cut(s) 48, 84
TfiI GAWTC 2 cut(s) 175, 428
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 2 cut(s) 33, 449
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 3 cut(s) 132, 139, 310
XapI RAATTY 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.