Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007290.1

Orthogroup ID

OG0025614

Physical Location & Seq

Genomic Coordinates Forward (+)

48946 .. 50445

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcttccttccatggctacatctgagagcttcttctccatctttgctcttctgggtattggtaaagtcgtcttctttaatggtttcagagctttggggcaatcatctcagagctctgatgaaaaaagatttggtggtggatctggaactgtagatctaccggaggctgaggttggaaaggtgaagttgaggtttgcgccggaaccaagtggttatcttcacattgggcactcgaaagcagctttactgaatcagtattttgctcagcggtatcaaggtcagcttattgtgcggtttgatgatactaatcctgctaaagaaagcaatgagtttgtgaataatcttctcaaagatattcagactttgggtatcaagaaccacccaggaacattcgaggtagatctaccggaggctgaggttggaaaggtgaagttgaggtttgcgccggaaccaagtggttatcttcacattgggcactcgaaagcagctttactgaatcagtattttgctcagcggtatcaaggtcagcttattgtgcggtttgatgatactaatcctgctaaagaaagcaatgagtttgtgaataatcttctcaaagatattcagactttgggtatcaagtatgaggaggttatctatacttcagatcacttcgttgagttgatggatatgaccgagaagctgattaaccaaggtaaagcatatgtcgacgatacacctagagaagagatgcaaaagcaacggatggatgggattgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

253

Amino Acids

28.42

Weight (kDa)

5.47

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	60 - 126	1.6e-27	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	142 - 250	1.4e-43	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025614)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007290.1_g000008
rosa_samantha	Rh1AG106900 Rh1DG112400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	4 cut(s)	268, 292, 514, 538
AclWI	GGATC	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	627
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	8 cut(s)	30, 92, 114, 242, 283, 488, 529, 682
AluI	AGCT	8 cut(s)	30, 92, 114, 242, 283, 488, 529, 682
Alw21I	GWGCWC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	239, 485
AspLEI	GCGC	2 cut(s)	199, 445
AsuHPI	GGTGA	2 cut(s)	193, 439
BaeGI	GKGCMC	2 cut(s)	231, 477
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	2 cut(s)	168, 414
BbvI	GCAGC	2 cut(s)	251, 497
BccI	CCATC	4 cut(s)	47, 658, 739, 743
BciT130I	CCWGG	1 cut(s)	384
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	1 cut(s)	150
BglII	AGATCT	2 cut(s)	154, 400
BisI	GCNGC	2 cut(s)	240, 486
BlpI	GCTNAGC	2 cut(s)	264, 510
BlsI	GCNGC	2 cut(s)	241, 487
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	204, 450
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	64
Bpu10I	CCTNAGC	2 cut(s)	168, 414
Bpu1102I	GCTNAGC	2 cut(s)	264, 510
BsaBI	GATNNNNATC	2 cut(s)	306, 552
BsaJI	CCNNGG	3 cut(s)	12, 382, 691
BsaWI	WCCGGW	2 cut(s)	160, 406
Bse3DI	GCAATG	2 cut(s)	331, 577
Bse8I	GATNNNNATC	2 cut(s)	306, 552
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	12, 382, 691
BseGI	GGATG	2 cut(s)	750, 754
BseJI	GATNNNNATC	2 cut(s)	306, 552
BseMI	GCAATG	2 cut(s)	331, 577
BseMII	CTCAG	6 cut(s)	15, 122, 159, 278, 405, 524
BseRI	GAGGAG	1 cut(s)	641
BseSI	GKGCMC	2 cut(s)	231, 477
BseXI	GCAGC	2 cut(s)	251, 497
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	161, 200, 407, 446
Bsp1286I	GDGCHC	3 cut(s)	116, 231, 477
Bsp143I	GATC	4 cut(s)	140, 154, 400, 646
Bsp1720I	GCTNAGC	2 cut(s)	264, 510
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	268, 292, 514, 538
BspCNI	CTCAG	6 cut(s)	16, 121, 160, 277, 406, 523
BspLI	GGNNCC	2 cut(s)	204, 450
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	331, 577
BssECI	CCNNGG	3 cut(s)	12, 382, 691
BssMI	GATC	4 cut(s)	140, 154, 400, 646
BssT1I	CCWWGG	2 cut(s)	12, 691
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	54, 720
BstDEI	CTNAG	6 cut(s)	24, 108, 168, 264, 414, 510
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	750, 754
BstHHI	GCGC	2 cut(s)	199, 445
BstKTI	GATC	4 cut(s)	143, 157, 403, 649
BstMBI	GATC	4 cut(s)	140, 154, 400, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 535
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	2 cut(s)	231, 477
BstV1I	GCAGC	2 cut(s)	251, 497
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	3 cut(s)	140, 154, 400
BstYI	RGATCY	3 cut(s)	140, 154, 400
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	750, 754
CfoI	GCGC	2 cut(s)	199, 445
CviAII	CATG	1 cut(s)	13
DdeI	CTNAG	6 cut(s)	24, 108, 168, 264, 414, 510
DpnI	GATC	4 cut(s)	142, 156, 402, 648
DpnII	GATC	4 cut(s)	140, 154, 400, 646
Eam1104I	CTCTTC	2 cut(s)	54, 720
EarI	CTCTTC	2 cut(s)	54, 720
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	12, 691
Eco24I	GRGCYC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	12, 691
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	12, 691
FaeI	CATG	1 cut(s)	16
FaiI	YATR	6 cut(s)	14, 624, 639, 671, 703, 705
FalI	AAGNNNNNCTT	4 cut(s)	267, 299, 513, 545
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	2 cut(s)	240, 486
FokI	GGATG	1 cut(s)	757
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	240, 486
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	2 cut(s)	198, 444
GluI	GCNGC	2 cut(s)	240, 486
HapII	CCGG	4 cut(s)	161, 200, 407, 446
HhaI	GCGC	2 cut(s)	199, 445
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	2 cut(s)	197, 443
HinP1I	GCGC	2 cut(s)	197, 443
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	2 cut(s)	250, 496
HpaII	CCGG	4 cut(s)	161, 200, 407, 446
HphI	GGTGA	2 cut(s)	193, 439
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	7 cut(s)	25, 89, 111, 118, 360, 606, 646
Hpy188III	TCNNGA	2 cut(s)	144, 373
Hpy8I	GTNNAC	1 cut(s)	709
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 535
HpyF3I	CTNAG	6 cut(s)	24, 108, 168, 264, 414, 510
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	2 cut(s)	197, 443
Kzo9I	GATC	4 cut(s)	140, 154, 400, 646
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	2 cut(s)	251, 497
LweI	GCATC	1 cut(s)	720
MaeI	CTAG	1 cut(s)	720
MalI	GATC	4 cut(s)	142, 156, 402, 648
MboI	GATC	4 cut(s)	140, 154, 400, 646
MboII	GAAGA	8 cut(s)	25, 41, 64, 209, 335, 455, 581, 737
MflI	RGATCY	3 cut(s)	140, 154, 400
MhlI	GDGCHC	3 cut(s)	116, 231, 477
MmeI	TCCRAC	2 cut(s)	154, 400
MnlI	CCTC	9 cut(s)	157, 163, 183, 388, 403, 409, 429, 619, 622
MseI	TTAA	2 cut(s)	78, 687
MspA1I	CMGCKG	2 cut(s)	268, 514
MspI	CCGG	4 cut(s)	161, 200, 407, 446
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	289, 535
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	4 cut(s)	140, 154, 400, 646
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	204, 450
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	250, 496
PkrI	GCNGC	2 cut(s)	241, 487
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	204, 450
PsuI	RGATCY	3 cut(s)	140, 154, 400
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	78, 687
SatI	GCNGC	2 cut(s)	240, 486
Sau3AI	GATC	4 cut(s)	140, 154, 400, 646
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	3 cut(s)	116, 231, 477
SfaNI	GCATC	1 cut(s)	720
SfcI	CTRYAG	1 cut(s)	150
SsiI	CCGC	4 cut(s)	268, 292, 514, 538
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	12, 691
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	4 cut(s)	233, 393, 479, 708
TaqII	GACCGA	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	250, 496
Tru1I	TTAA	2 cut(s)	78, 687
Tru9I	TTAA	2 cut(s)	78, 687
TseI	GCWGC	2 cut(s)	239, 485
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.