Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0025614

Physical Location & Seq

Genomic Coordinates Reverse (-)

18567641 .. 18568809

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTTCCTTCCATGGCTACATCTGAGAGCTTCTTTTCCATCTTTGCTCTTCTGGGTATTGGTAAAGTCGTCTTCTTTAATGGTTTCAGAGCTTTGGGGCAATCATCTCAGAGCTCTGATGAAAAAAGATTTGGTGGTGGATCTGGAACTGTAAGAGCTACTTGGGGAAATAAAGGCACGGTTCTTGCGGCCAACGAATTTGACCCACAGGGACTTGATTCGATTATTTTGGTCCATGCAGATGTGTGTTCGTGGCGTGCCGGGAAAAAATGCTCAGCGAAATTGAAAGAGAACCCAGCCAGCAGTCAGCAGTCGAAGACTAAAGCAGGAACCACCCGAGGAACATTCGAGGTAGATCTACCGGAGGCTGAGGTTGGAAAGGTGAAGTTGAGGTTTGCGCCGGAACCAAGTGGTTATCTTCAAATTGGGCACTCGAAAGCAGCTTTACTGAATCAGTATTTTGCTCAGCGGTATCAAGGTCAGCTTATTGTGCGGTTTGATGATACTAATCCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTTCTCAAAGATATTCAGACTTTGGGTATCAAGTATGAGGAGGTTACCTATACTTCAGATCACTTCGTTGAGTTGATGGATATGACCGAGAAGCTGATTAACCAAGGTAAAGCATATGTCGACGATACACCTAGAGAAGAGATGCAAAAGCAACGGATGGATGGGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

238

Amino Acids

26.32

Weight (kDa)

5.75

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	127 - 235	4.6e-42	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025614)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007290.1_g000008
rosa_samantha	Rh1AG106900 Rh1DG112400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	3 cut(s)	188, 469, 493
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	582
AgsI	TTSAA	2 cut(s)	286, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	7 cut(s)	30, 92, 114, 158, 443, 484, 637
AluI	AGCT	7 cut(s)	30, 92, 114, 158, 443, 484, 637
Alw21I	GWGCWC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	64, 323
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	4 cut(s)	47, 613, 694, 698
BcnI	CCSGG	1 cut(s)	262
BfaI	CTAG	1 cut(s)	675
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	189, 441
BlpI	GCTNAGC	2 cut(s)	274, 465
BlsI	GCNGC	2 cut(s)	190, 442
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	331, 405
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	675
BpiI	GAAGAC	2 cut(s)	64, 323
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu1102I	GCTNAGC	2 cut(s)	274, 465
BpuMI	CCSGG	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	12, 337, 646
BsaWI	WCCGGW	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	12, 337, 646
BseGI	GGATG	2 cut(s)	705, 709
BseJI	GATNNNNATC	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	5 cut(s)	15, 122, 288, 360, 479
BseRI	GAGGAG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	261, 362, 401
BslFI	GGGAC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	116, 432
Bsp143I	GATC	3 cut(s)	140, 355, 601
Bsp1720I	GCTNAGC	2 cut(s)	274, 465
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	3 cut(s)	188, 469, 493
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	5 cut(s)	16, 121, 287, 361, 478
BspLI	GGNNCC	2 cut(s)	331, 405
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	12, 337, 646
BssMI	GATC	3 cut(s)	140, 355, 601
BssT1I	CCWWGG	2 cut(s)	12, 646
Bst4CI	ACNGT	2 cut(s)	151, 181
Bst6I	CTCTTC	2 cut(s)	54, 675
BstC8I	GCNNGC	2 cut(s)	258, 301
BstDEI	CTNAG	5 cut(s)	24, 108, 274, 369, 465
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	705, 709
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	3 cut(s)	143, 358, 604
BstMBI	GATC	3 cut(s)	140, 355, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	452
BstV2I	GAAGAC	2 cut(s)	64, 323
BstX2I	RGATCY	2 cut(s)	140, 355
BstYI	RGATCY	2 cut(s)	140, 355
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	705, 709
Cac8I	GCNNGC	2 cut(s)	258, 301
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	2 cut(s)	13, 236
DdeI	CTNAG	5 cut(s)	24, 108, 274, 369, 465
DpnI	GATC	3 cut(s)	142, 357, 603
DpnII	GATC	3 cut(s)	140, 355, 601
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	54, 675
EarI	CTCTTC	2 cut(s)	54, 675
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	12, 646
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	336
Eco91I	GGTNACC	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	12, 646
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	12, 646
FaeI	CATG	2 cut(s)	16, 239
FaiI	YATR	7 cut(s)	14, 237, 579, 594, 626, 658, 660
FalI	AAGNNNNNCTT	4 cut(s)	145, 177, 468, 500
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	2 cut(s)	12, 235
FauNDI	CATATG	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	189, 441
FokI	GGATG	1 cut(s)	712
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	189, 441
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	2 cut(s)	189, 441
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	261, 362, 401
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	16, 239
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	2 cut(s)	218, 451
HpaII	CCGG	3 cut(s)	261, 362, 401
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	6 cut(s)	25, 89, 111, 118, 561, 601
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	664
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	151, 181
HpyCH4V	TGCA	2 cut(s)	239, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	5 cut(s)	24, 108, 274, 369, 465
Hsp92II	CATG	2 cut(s)	16, 239
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	140, 355, 601
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	1 cut(s)	675
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	3 cut(s)	142, 357, 603
MboI	GATC	3 cut(s)	140, 355, 601
MboII	GAAGA	6 cut(s)	41, 64, 328, 410, 536, 692
MflI	RGATCY	2 cut(s)	140, 355
MhlI	GDGCHC	2 cut(s)	116, 432
MluCI	AATT	3 cut(s)	197, 281, 423
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	332, 343, 358, 364, 384, 574, 577
MseI	TTAA	2 cut(s)	78, 642
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	3 cut(s)	261, 362, 401
MspR9I	CCNGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	3 cut(s)	140, 355, 601
NlaIII	CATG	2 cut(s)	16, 239
NlaIV	GGNNCC	2 cut(s)	331, 405
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	218, 451
PkrI	GCNGC	2 cut(s)	190, 442
Psp124BI	GAGCTC	1 cut(s)	116
PspEI	GGTNACC	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	331, 405
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	140, 355
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	78, 642
SatI	GCNGC	2 cut(s)	189, 441
Sau3AI	GATC	3 cut(s)	140, 355, 601
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	116, 432
SfaNI	GCATC	1 cut(s)	675
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	197, 281, 423
SsiI	CCGC	3 cut(s)	188, 469, 493
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	2 cut(s)	12, 646
TaaI	ACNGT	2 cut(s)	151, 181
TaqI	TCGA	5 cut(s)	221, 314, 348, 434, 663
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	3 cut(s)	197, 281, 423
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	218, 451
Tru1I	TTAA	2 cut(s)	78, 642
Tru9I	TTAA	2 cut(s)	78, 642
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.