Rh1DG112400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
20732311 .. 20732517
207 bp
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UTR
Exon/CDS
Intron
Rh1DG112400.1

Sequence Viewer

Length: 207 bp
ATGGCTACATCTGAGAGCTTCTTCTCCATCTTTGCTCTTCTGGGTTTTGGTAAAGTCGTCTTCTTTAATGGTTTCAGAGCTTTGGGGCAATCATCTCAGAGCTCTGATGAAAAAAGATTTGGTGGTGGATCTGGAACTGTAAGAGCTGCTTGGGGAAATAAAGGCACGGTTCTTGCGGCCAACGAATTTGACCCACAATTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.18

Weight (kDa)

8.25

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025614)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007290.1_g000008
rosa_samantha Rh1AG106900 Rh1DG112400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 5 cut(s) 18, 80, 102, 146, 204
AluI AGCT 5 cut(s) 18, 80, 102, 146, 204
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 185
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 35
BisI GCNGC 2 cut(s) 147, 177
BlsI GCNGC 2 cut(s) 148, 178
BpiI GAAGAC 1 cut(s) 52
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 104
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 4, 109
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 42
BssMI GATC 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 139, 169
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 12, 96
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 179
CviJI RGCY 7 cut(s) 5, 18, 80, 102, 146, 179, 204
CviKI_1 RGCY 7 cut(s) 5, 18, 80, 102, 146, 179, 204
DdeI CTNAG 2 cut(s) 12, 96
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 104
FalI AAGNNNNNCTT 2 cut(s) 133, 165
Fnu4HI GCNGC 2 cut(s) 147, 177
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 147, 177
GluI GCNGC 2 cut(s) 147, 177
HaeIII GGCC 1 cut(s) 179
Hpy188I TCNGA 4 cut(s) 13, 77, 99, 106
Hpy188III TCNNGA 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 139, 169
HpyF3I CTNAG 2 cut(s) 12, 96
Kzo9I GATC 1 cut(s) 128
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 2 cut(s) 26, 117
Lsp1109I GCAGC 1 cut(s) 133
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 13, 29, 52
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 185, 197
MseI TTAA 1 cut(s) 66
MunI CAATTG 1 cut(s) 197
NdeII GATC 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 148, 178
Psp124BI GAGCTC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 128
SacI GAGCTC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 147, 177
Sau3AI GATC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 104
SetI ASST 5 cut(s) 20, 82, 104, 148, 206
SgeI CNNG 5 cut(s) 53, 144, 162, 178, 185
Sse9I AATT 2 cut(s) 185, 197
SsiI CCGC 1 cut(s) 176
SstI GAGCTC 1 cut(s) 104
TaaI ACNGT 2 cut(s) 139, 169
TasI AATT 2 cut(s) 185, 197
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 123
XapI RAATTY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.