Rmu_sc0007341.1_g000010

Phosphoglycerate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007341.1
OG0025615
Physical Location & Seq
Reverse (-)
40350 .. 42959
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007341.1_g000010.1.cds

Sequence Viewer

Length: 516 bp
ctgggagttgagttggaagaacatggatttgtagcaagaattgaagaggatgatggcagcttggtgatggtttgggcggaggagaaggagatgagagagaggaggaggagagagaagaagaagaagaggactgcagttgaagaagaagtggaatctgaagtgctgagatcccgacctcgatctaaaattgaagtaacagctctaaatccagagcccggcctcgatctgaagaaattaaagaggaatggttctttcctctcaagccccaccgaagtcgaggttggagccctaaacccgaacacagcaacccagctgcactcaactacactgtttctgactctctccgtccccgactctccgtctccgcctctccgggttgatctcaatgttcctttggatgacgactgtaagatcactgatgacactagagtccgagcagctatccccaccatcaagtacttgctcagaaatggtgccagagtcatcctcgcttcccacttggagaattcgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003824 GO:0004618 GO:0004672 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016020 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016774 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

171

Amino Acids

19.25

Weight (kDa)

6.03

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025615)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007341.1_g000010 Rmu_sc0030800.1_g000001 Rmu_sc0030801.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 473
AciI CCGC 2 cut(s) 77, 365
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 2 cut(s) 177, 248
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 44, 140, 191
AhdI GACNNNNNGTC 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 4 cut(s) 60, 200, 313, 440
AluI AGCT 4 cut(s) 60, 200, 313, 440
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 57, 313, 437
ApoI RAATTY 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 216, 374
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 509
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 216, 289
BbvI GCAGC 3 cut(s) 69, 300, 449
BccI CCATC 3 cut(s) 47, 61, 458
BcnI CCSGG 2 cut(s) 216, 374
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 58, 314, 438
BlsI GCNGC 3 cut(s) 59, 315, 439
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 216, 374
BmeRI GACNNNNNGTC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 286, 475
BmrFI CCNGG 2 cut(s) 216, 374
BplI GAGNNNNNCTC 2 cut(s) 471, 503
Bpu14I TTCGAA 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 216, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 55, 403, 483
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 2 cut(s) 155, 478
BseRI GAGGAG 4 cut(s) 95, 115, 118, 121
BseXI GCAGC 3 cut(s) 69, 300, 449
BseYI CCCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 473
BsiSI CCGG 2 cut(s) 216, 373
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 366
BsmBI CGTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 216, 289
Bsp143I GATC 5 cut(s) 167, 179, 223, 379, 411
BspACI CCGC 2 cut(s) 77, 365
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 156, 477
BspLI GGNNCC 2 cut(s) 286, 475
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 473
BssMI GATC 5 cut(s) 167, 179, 223, 379, 411
Bst4CI ACNGT 2 cut(s) 330, 407
Bst6I CTCTTC 2 cut(s) 39, 119
BstBI TTCGAA 1 cut(s) 509
BstDEI CTNAG 2 cut(s) 164, 464
BstF5I GGATG 3 cut(s) 55, 403, 483
BstKTI GATC 5 cut(s) 170, 182, 226, 382, 414
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 5 cut(s) 167, 179, 223, 379, 411
BstSCI CCNGG 2 cut(s) 214, 372
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 69, 300, 449
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 55, 403, 483
BtsIMutI CAGTG 2 cut(s) 326, 414
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 23
CviJI RGCY 8 cut(s) 60, 200, 214, 219, 264, 287, 313, 440
CviKI_1 RGCY 8 cut(s) 60, 200, 214, 219, 264, 287, 313, 440
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 164, 464
DpnI GATC 5 cut(s) 169, 181, 225, 381, 413
DpnII GATC 5 cut(s) 167, 179, 223, 379, 411
DrdI GACNNNNNNGTC 1 cut(s) 428
DriI GACNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 428
Eam1104I CTCTTC 2 cut(s) 39, 119
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 2 cut(s) 39, 119
EciI GGCGGA 2 cut(s) 92, 354
Eco24I GRGCYC 2 cut(s) 216, 289
Eco57I CTGAAG 2 cut(s) 177, 248
EcoRI GAATTC 1 cut(s) 505
EcoT38I GRGCYC 2 cut(s) 216, 289
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 1 cut(s) 26
FaiI YATR 1 cut(s) 24
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 58, 314, 438
FokI GGATG 3 cut(s) 62, 410, 470
FriOI GRGCYC 2 cut(s) 216, 289
Fsp4HI GCNGC 3 cut(s) 58, 314, 438
FspBI CTAG 1 cut(s) 426
GluI GCNGC 3 cut(s) 58, 314, 438
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 219
HapII CCGG 2 cut(s) 216, 373
Hin1II CATG 1 cut(s) 26
HinfI GANTC 5 cut(s) 152, 337, 353, 429, 480
HpaII CCGG 2 cut(s) 216, 373
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 5 cut(s) 157, 228, 336, 434, 467
Hpy188III TCNNGA 2 cut(s) 171, 209
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 330, 407
HpyCH4V TGCA 2 cut(s) 134, 316
HpyF3I CTNAG 2 cut(s) 164, 464
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 5 cut(s) 167, 179, 223, 379, 411
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 5 cut(s) 222, 229, 323, 386, 490
Lsp1109I GCAGC 3 cut(s) 69, 300, 449
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 193
MalI GATC 5 cut(s) 169, 181, 225, 381, 413
MboI GATC 5 cut(s) 167, 179, 223, 379, 411
MboII GAAGA 9 cut(s) 29, 56, 127, 130, 133, 136, 152, 155, 241
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 216, 289
MluCI AATT 4 cut(s) 39, 186, 233, 505
MlyI GAGTC 4 cut(s) 331, 347, 438, 489
MmeI TCCRAC 1 cut(s) 262
MseI TTAA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 2 cut(s) 216, 373
MspR9I CCNGG 2 cut(s) 216, 374
NciI CCSGG 2 cut(s) 216, 374
NdeII GATC 5 cut(s) 167, 179, 223, 379, 411
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 286, 475
NspV TTCGAA 1 cut(s) 509
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 3 cut(s) 59, 315, 439
PleI GAGTC 4 cut(s) 331, 347, 437, 488
PpsI GAGTC 4 cut(s) 331, 347, 437, 488
PspFI CCCAGC 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 286, 475
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 3 cut(s) 58, 314, 438
Sau3AI GATC 5 cut(s) 167, 179, 223, 379, 411
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 4 cut(s) 331, 347, 438, 489
ScrFI CCNGG 2 cut(s) 216, 374
SduI GDGCHC 2 cut(s) 216, 289
SetI ASST 6 cut(s) 62, 178, 202, 282, 315, 442
SfcI CTRYAG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 4 cut(s) 39, 186, 233, 505
SsiI CCGC 2 cut(s) 77, 365
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 214, 372
TaaI ACNGT 2 cut(s) 330, 407
TaqI TCGA 4 cut(s) 178, 222, 276, 509
TasI AATT 4 cut(s) 39, 186, 233, 505
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 2 cut(s) 333, 421
TseI GCWGC 3 cut(s) 57, 313, 437
TspGWI ACGGA 2 cut(s) 334, 348
TspRI CASTG 2 cut(s) 333, 421
XapI RAATTY 1 cut(s) 505
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.