Rmu_sc0030800.1_g000001

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030800.1
OG0025615
Physical Location & Seq
Forward (+)
248 .. 475
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030800.1_g000001.1.cds

Sequence Viewer

Length: 228 bp
atggcgaccaagaggagtgtgagtaccttgaaggaggctgatttgaagggcaagagggttttcgttagggttgatctcaatgttcctttggatgacgactgcaagatcaccgatgacactagagtccgagctgctgtccccaccatcaagtacttgctcggcaatggtgccaaagtcatcttggcttctcacttggtattccttcactcgtttcactcttttcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003824 GO:0004618 GO:0004672 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016020 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016774 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

75

Amino Acids

8.4

Weight (kDa)

9.8

Isoelectric Point (pI)

16.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025615)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007341.1_g000010 Rmu_sc0030800.1_g000001 Rmu_sc0030801.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 167
AfaI GTAC 2 cut(s) 25, 152
AgsI TTSAA 2 cut(s) 31, 46
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 100
BanI GGYRCC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 152
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bse3DI GCAATG 1 cut(s) 169
BseGI GGATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 167
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 73, 105
BspLI GGNNCC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 169
BssMI GATC 2 cut(s) 73, 105
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 2 cut(s) 76, 108
BstMBI GATC 2 cut(s) 73, 105
BstV1I GCAGC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 97
Csp6I GTAC 2 cut(s) 24, 151
CviJI RGCY 3 cut(s) 38, 131, 185
CviKI_1 RGCY 3 cut(s) 38, 131, 185
CviQI GTAC 2 cut(s) 24, 151
DpnI GATC 2 cut(s) 75, 107
DpnII GATC 2 cut(s) 73, 105
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
FaqI GGGAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 123
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 25, 40, 212
HpyCH4V TGCA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 73, 105
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 120
MalI GATC 2 cut(s) 75, 107
MboI GATC 2 cut(s) 73, 105
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 3 cut(s) 6, 28, 48
NdeII GATC 2 cut(s) 73, 105
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 138
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 169
RsaI GTAC 2 cut(s) 25, 152
RsaNI GTAC 2 cut(s) 24, 151
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 73, 105
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 132
SetI ASST 2 cut(s) 29, 133
SspMI CTAG 1 cut(s) 120
TaqI TCGA 1 cut(s) 223
TatI WGTACW 1 cut(s) 150
TseI GCWGC 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.